Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m21
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    23   9.1  

>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 35  DSEERIGPAITQINRHPYVGT-LIKNGTYICSAVILNTYWLA 157
           DS+ RI P    +  HP +   L+K GTY+    ILN ++ A
Sbjct: 337 DSDPRIRPTSRDLLDHPVIKKKLMKRGTYVKCISILNGFFYA 378


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = -1

Query: 198 YDDIMALSKQSDSVASQYVLRITALQMYVPFLIRVPTYGCRFICVIAGPILSSLSYF 28
           Y  +  +S     +   +V+ +T +Q  +P++  +P Y   + C++ G  +  L +F
Sbjct: 221 YHQMENMSAPRQQLYKSFVMGLT-IQCVLPYVFYIPIYTLYYYCLLTGEEILFLEFF 276


>Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical
           protein F17A2.12 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 177 SKQSDSVASQYVLRITALQMYVPFLIRVPTYGCRFICVIAGPILSSLSYF 28
           SK   S    +V  +T +Q ++P +  VP +G  F C++    +    YF
Sbjct: 225 SKWKKSQIQVFVKGLT-IQAFLPLIFYVPVFGLYFYCILTHTEILFQQYF 273


>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
           protein C54G7.4 protein.
          Length = 1199

 Score = 23.4 bits (48), Expect(2) = 9.1
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 47  RIGPAITQINRHPYVGTLIKNGTYI-CSAVILNTYW 151
           +IG   T +N+ P   TL+ N      +A ++N  W
Sbjct: 42  KIGTDATDLNKSPNAATLVVNQALEGHNATVMNATW 77



 Score = 22.2 bits (45), Expect(2) = 9.1
 Identities = 19/101 (18%), Positives = 45/101 (44%)
 Frame = +2

Query: 134 ILNTYWLATLSDCFDRAIISSYVTHKNLGNFAIRAGSSYNNKGGTIHKIKLLINNFDLKV 313
           + N  W   + +  +++++ S   +      AI A +  N   GT+   ++     ++++
Sbjct: 98  MFNEQWCEEMINNRNKSVVVSICWNLEGTKIAI-AYADGNVIVGTLEGNRIWNKELEIQL 156

Query: 314 SAVKLDIPLEFGSQVDAARLPSPDQEVMLGYLASMTAWTPT 436
           +A +LDIP+      D  +  +  +E     +  +  W+PT
Sbjct: 157 AACELDIPMHCLEAEDLEQALA-KKEHQKEEIVCLKYWSPT 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,605
Number of Sequences: 27780
Number of extensions: 331633
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)