Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m21
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    30   1.2  
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    30   1.2  
At1g08100.1 68414.m00886 high-affinity nitrate transporter (ACH2...    28   6.3  
At1g08090.1 68414.m00885 high-affinity nitrate transporter (ACH1...    28   6.3  
At5g58000.1 68418.m07256 phosphatase-related weak similarity to ...    27   8.3  
At3g13190.2 68416.m01651 myosin heavy chain-related contains wea...    27   8.3  
At3g13190.1 68416.m01650 myosin heavy chain-related contains wea...    27   8.3  

>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 487 RRRQITSRPLYLRRRCSRSKQTFLQTRQRRRCDSKRYSDRG 609
           +RR+  S P Y +RR SRS   + + R+R R  SK   + G
Sbjct: 280 KRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENG 320


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 487 RRRQITSRPLYLRRRCSRSKQTFLQTRQRRRCDSKRYSDRG 609
           +RR+  S P Y +RR SRS   + + R+R R  SK   + G
Sbjct: 280 KRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENG 320


>At1g08100.1 68414.m00886 high-affinity nitrate transporter (ACH2)
           identical to high-affinity nitrate transporter ACH2
           [Arabidopsis thaliana] GI:3608364
          Length = 522

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 93  PTYGCRFICVIAGPILSSLSYFS 25
           P YGC F+ +++ P + S+S+ S
Sbjct: 125 PRYGCAFLVMLSAPTVFSMSFVS 147


>At1g08090.1 68414.m00885 high-affinity nitrate transporter (ACH1)
           identical to trans-membrane nitrate transporter protein
           AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 530

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 93  PTYGCRFICVIAGPILSSLSYFS 25
           P YGC F+ +++ P + S+S+ S
Sbjct: 127 PRYGCAFLVMLSAPTVFSMSFVS 149


>At5g58000.1 68418.m07256 phosphatase-related weak similarity to CTD
           phosphatase-like 3 [Arabidopsis thaliana] GI:22212705;
           contains Pfam profiles PF02453: Reticulon, PF00533:
           BRCA1 C Terminus (BRCT) domain, PF03031: NLI interacting
           factor
          Length = 1011

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 616 RRYRDQSIVLNHSAAVVLSAEMSVWILNTSDANIMA 509
           RR+RD     NH  AV L+    VW L++  A + A
Sbjct: 496 RRFRDAWESCNHKKAVALALFTLVWNLSSVTARVWA 531


>At3g13190.2 68416.m01651 myosin heavy chain-related contains weak
           similarity to Myosin II heavy chain, non muscle
           (Swiss-Prot:P05659) [Acanthamoeba castellanii]
          Length = 316

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 475 VDLRRRRQITSRPLYLRRRCSRSKQTFLQTRQR 573
           V+L+RRR+  SR L   + C++S +  L+++ R
Sbjct: 273 VELKRRRKAASRILAESKMCAKSTKEVLKSKPR 305


>At3g13190.1 68416.m01650 myosin heavy chain-related contains weak
           similarity to Myosin II heavy chain, non muscle
           (Swiss-Prot:P05659) [Acanthamoeba castellanii]
          Length = 316

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 475 VDLRRRRQITSRPLYLRRRCSRSKQTFLQTRQR 573
           V+L+RRR+  SR L   + C++S +  L+++ R
Sbjct: 273 VELKRRRKAASRILAESKMCAKSTKEVLKSKPR 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,130
Number of Sequences: 28952
Number of extensions: 303346
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)