Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m19
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22501| Best HMM Match : TBCC (HMM E-Value=0)                        28   4.1  
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_22501| Best HMM Match : TBCC (HMM E-Value=0)
          Length = 188

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 425 CSTLRTNRLERETFYLHLT*AREAFSFVSECTQATRELQCKIQSAYLISNFQDFSEH 255
           C  LR +   R  FYLH+T +R      S    A  +LQ +++ A+  +   D +E+
Sbjct: 99  CQQLRVHHTHRSLFYLHVT-SRAIIEDSSGVGFAPYDLQYELKEAHFKAAGLDLNEN 154


>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 272 ESSKLNRHFVFYIAVHELLECTLTQS*KLPEL 367
           ES + N+HF  ++   +L  C  T    LP+L
Sbjct: 472 ESGQANKHFPIFVRASDLEACARTHHENLPQL 503


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 496  LINVEKVEVLVY*IRLIGYAYAINALRFERT 404
            L+ + + E+LV  +R IG A  + ALRFER+
Sbjct: 2730 LLPIRQKEILVSRLRDIGVANTLIALRFERS 2760


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,373
Number of Sequences: 59808
Number of extensions: 211229
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)