Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m18
         (258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    19   7.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   9.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   9.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   9.8  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.4 bits (38), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 94  IKILISNEPHTYIRTTLG 41
           +K+L+   P T   TTLG
Sbjct: 71  LKVLVPLGPETSRHTTLG 88


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 76  NEPHTYIRTTLGPSK 32
           N  H+Y+ T   P+K
Sbjct: 94  NGKHSYLHTITSPNK 108


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 256 FFLIMQVLFYCYYNIA 209
           FFL M V+ Y Y  I+
Sbjct: 207 FFLPMLVMLYVYGRIS 222


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 9.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 232 FYCYYNIAKTFIQK 191
           F CYY++ + F  K
Sbjct: 15  FSCYYSLKRHFQDK 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,981
Number of Sequences: 438
Number of extensions: 859
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4636803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)