Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m18
         (258 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27510.1 68418.m03291 protein kinase family protein contains ...    26   3.0  
At3g16690.1 68416.m02132 nodulin MtN3 family protein contains Pf...    25   9.1  
At2g03520.1 68415.m00312 expressed protein similar to SP|Q41706 ...    25   9.1  

>At5g27510.1 68418.m03291 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 301

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 3   SILIYGNIYCLLGPNVVRIYVCG-SLEIKI 89
           SI  +G ++C L P  V ++ CG S E+KI
Sbjct: 123 SIHSHGYVHCDLKPENVLVFPCGDSYEVKI 152


>At3g16690.1 68416.m02132 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family
          Length = 230

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 256 FFL-IMQVLFYCYYNIAKTFIQ 194
           FFL IMQ+L Y YY  A+  ++
Sbjct: 196 FFLGIMQLLIYAYYRNAEPIVE 217


>At2g03520.1 68415.m00312 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 388

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/28 (32%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 164 IINIIINVTFLYKCLCNIV-VTIKKYLH 244
           +I++I+N+ FLY+ +  +   ++KKY++
Sbjct: 273 LISLILNLIFLYRPMVGLARSSLKKYIY 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,194,263
Number of Sequences: 28952
Number of extensions: 57598
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 12,070,560
effective HSP length: 64
effective length of database: 10,217,632
effective search space used: 214570272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)