Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m15
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16550.1 68417.m02504 heat shock protein-related contains sim...    30   1.7  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    29   3.0  
At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR...    28   7.0  

>At4g16550.1 68417.m02504 heat shock protein-related contains
           similarity to Swiss-Prot:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 743

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 456 AKKSHKTRFDPGGADTS-GQVCRTCSRTNRITRGTSDGRARRTLTGSSFSPCTITC 292
           A K HK  +      TS G VC+ C  +   T   SDG  R  LT S+ +P   +C
Sbjct: 553 APKEHKYDYSERNYGTSTGLVCKCCEISG-FTSFMSDGVLRLLLTKSNITPQRSSC 607


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
 Frame = +2

Query: 308 GENEEPVRVRRARPSDVPRVIRFVREHVRQTWPEVSAPPGSNLVLCDFLARALAQGHS-- 481
           G N  P   +   PSD+ R   F  +   +T P    P GS   +   ++       S  
Sbjct: 37  GGNPFPANSKVNIPSDLTRRNSFGGDKENETKPVQLTPKGSKNFMSPTISAVSKINASPR 96

Query: 482 --MLAEKQEIRRGWSQIRGLAL 541
             +L++K E+ R +S ++GL L
Sbjct: 97  KRVLSDKNEMSRSFSDVKGLIL 118


>At3g46870.1 68416.m05087 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 257

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -1

Query: 500 LAFRLTLNGLEPTP*PRNRTKPDLILEELIP 408
           L FR+ L GL P P  RN+ K D   EEL P
Sbjct: 214 LPFRVLLKGLLPHPLLRNKVKKD--FEELFP 242


>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 290  KQVMVQGENEEPVRVRRARPSDVPRVIR 373
            K++ V  +NE P++  R RP+ +PR  R
Sbjct: 1176 KRMRVSIKNERPLKKSRTRPASIPRTGR 1203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,819
Number of Sequences: 28952
Number of extensions: 295761
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)