Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10m11
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 100 1e-21
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 56 3e-08
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 54 7e-08
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 52 4e-07
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 51 6e-07
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 51 6e-07
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 50 1e-06
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 50 1e-06
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 50 1e-06
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 50 1e-06
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 49 2e-06
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 49 2e-06
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 49 2e-06
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 49 2e-06
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 49 2e-06
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 49 3e-06
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 48 6e-06
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 48 6e-06
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 48 6e-06
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 48 8e-06
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 48 8e-06
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 47 1e-05
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 46 3e-05
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 46 3e-05
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 45 5e-05
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 44 9e-05
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 43 2e-04
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 43 2e-04
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 43 2e-04
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 43 2e-04
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 42 3e-04
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 42 3e-04
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 42 3e-04
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 42 3e-04
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 42 4e-04
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 42 4e-04
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 42 5e-04
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 42 5e-04
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 42 5e-04
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 42 5e-04
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 41 7e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 41 9e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 41 9e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 41 9e-04
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 41 9e-04
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 40 0.001
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 40 0.001
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 40 0.002
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 40 0.002
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 40 0.002
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 40 0.002
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 40 0.002
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 40 0.002
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 40 0.002
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 40 0.002
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 39 0.003
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 39 0.003
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 39 0.003
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 39 0.003
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 39 0.003
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 38 0.005
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 38 0.006
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 38 0.006
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 38 0.008
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 38 0.008
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 38 0.008
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 37 0.014
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 37 0.014
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 37 0.014
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 37 0.014
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 37 0.014
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 37 0.014
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 36 0.019
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 36 0.019
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 36 0.019
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 36 0.019
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 36 0.019
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 36 0.025
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 36 0.025
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 36 0.033
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 36 0.033
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 36 0.033
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 36 0.033
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 36 0.033
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 36 0.033
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 36 0.033
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 36 0.033
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 35 0.043
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 35 0.043
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 35 0.043
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 35 0.057
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 35 0.057
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 34 0.075
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 34 0.075
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 34 0.075
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea... 34 0.075
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 34 0.075
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 34 0.099
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 34 0.099
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 34 0.099
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 34 0.099
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 34 0.099
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 33 0.13
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 33 0.13
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 33 0.13
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 33 0.13
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 33 0.13
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 33 0.17
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 33 0.17
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 33 0.17
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 33 0.17
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 33 0.17
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 33 0.23
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 33 0.23
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 33 0.23
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 33 0.23
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 33 0.23
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 33 0.23
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 33 0.23
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 33 0.23
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 32 0.30
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 32 0.30
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 32 0.30
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 32 0.30
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 32 0.40
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 32 0.40
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 32 0.40
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 31 0.53
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 31 0.53
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 31 0.53
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 31 0.53
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 31 0.70
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 31 0.70
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 31 0.70
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 31 0.70
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 31 0.70
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 31 0.70
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 31 0.93
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 31 0.93
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 31 0.93
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 31 0.93
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 31 0.93
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 30 1.2
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 30 1.6
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 30 1.6
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 30 1.6
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.6
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 30 1.6
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 29 2.1
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 29 2.1
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 2.8
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 29 2.8
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 2.8
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote... 29 2.8
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 29 2.8
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 29 2.8
At1g80380.2 68414.m09410 phosphoribulokinase/uridine kinase-rela... 29 2.8
At1g16880.2 68414.m02039 uridylyltransferase-related similar to ... 29 2.8
At1g16880.1 68414.m02040 uridylyltransferase-related similar to ... 29 2.8
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 3.7
At3g48260.1 68416.m05267 protein kinase family protein contains ... 29 3.7
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 29 3.7
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 29 3.7
At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40... 28 4.9
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 28 4.9
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 4.9
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 28 6.5
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 28 6.5
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 28 6.5
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 28 6.5
At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP... 28 6.5
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a... 28 6.5
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 27 8.6
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa... 27 8.6
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 100 bits (239), Expect = 1e-21
Identities = 56/173 (32%), Positives = 93/173 (53%), Gaps = 1/173 (0%)
Frame = +3
Query: 162 AMSNLKEIYEKSAEFTAFYTGGDIQWTNDGLQMLCLCDEAIKVVE-VDTLITSLIIGETE 338
A +LK+ Y S FY GG ++DG + C C + I +V+ D+ + S I GE+
Sbjct: 2 APHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGES- 60
Query: 339 EDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTD 518
D + +S ++ + +A S I++WD ET ++ W+ H+GPV+ +A ++
Sbjct: 61 -----DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKG-HEGPVMGMACHASG 114
Query: 519 ENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+A+ G+D V +WDV CT RG GV S + +HPDS+K ++ +DD
Sbjct: 115 GLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDD 167
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/79 (26%), Positives = 42/79 (53%)
Frame = +3
Query: 357 QIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASG 536
+I++ + S +Q ++TA +K+W G LK + H V++ +F + S
Sbjct: 543 RIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEG-HTSSVLRASFITDGTQFVSC 601
Query: 537 GSDGNVRLWDVGHNTCTSS 593
G+DG ++LW+V + C ++
Sbjct: 602 GADGLLKLWNVNTSECIAT 620
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 399 VTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
V+ GL+K+W+ T + + H+ V LA E IA+GG D + LW
Sbjct: 599 VSCGADGLLKLWNVNTSECIATY-DQHEDKVWALAVGKKTEMIATGGGDAVINLW 652
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/86 (16%), Positives = 36/86 (41%)
Frame = +3
Query: 345 AENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN 524
A + I + ++ ++ + T + +W V + + HK + + F + D+
Sbjct: 497 AHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHV-VTLKGHKRRIFSVEFSTVDQC 555
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRG 602
+ + D V++W + +C + G
Sbjct: 556 VMTASGDKTVKIWAISDGSCLKTFEG 581
Score = 29.5 bits (63), Expect = 2.1
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Frame = +3
Query: 288 VVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIW 467
V E + +++ ++G EE A+ F + Q + A ++++D T +
Sbjct: 343 VEETELVLSKRLVGYNEEIAD----MKF-LGDEEQFLAVATNLEEVRVYDVAT-MSCSYV 396
Query: 468 RSSHKGPVVKL---AFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
+ HK V+ L S + I +G D VRLW+ +C G G + +
Sbjct: 397 LAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAK 456
Query: 639 DSSKQLVFGAAD 674
S V G+ D
Sbjct: 457 KSFSFFVSGSGD 468
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/94 (29%), Positives = 48/94 (51%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
++ SG+IK+WD E ++ + + H+ + F E +ASG SD N+R+WD
Sbjct: 22 VLAGASSGVIKLWDLEESKMVRAF-TGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRK 80
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
C + +G S +E+ PD + +V G D+
Sbjct: 81 KGCIQTYKGHTRGISTIEFSPD-GRWVVSGGLDN 113
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/106 (26%), Positives = 49/106 (46%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
I T + S + +V+ ++K+WD G L ++ H+GP+ L F + +A+G
Sbjct: 94 ISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKC-HEGPIRSLDFHPLEFLLATGS 152
Query: 540 SDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+D V+ WD+ + R + +HPD Q +F DD
Sbjct: 153 ADRTVKFWDLETFELIGTTRPEATGVRAIAFHPDG--QTLFCGLDD 196
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H PV +AF+S + + +G S G ++LWD+ + + G S +E+HP + L
Sbjct: 6 HTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHP-FGEFL 64
Query: 657 VFGAAD 674
G++D
Sbjct: 65 ASGSSD 70
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/84 (22%), Positives = 37/84 (44%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+++WD ++ ++ +G + + F + SGG D V++WD+ +
Sbjct: 73 LRVWDTRKKGCIQTYKGHTRG-ISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKC 131
Query: 603 AMGVFSVLEYHPDSSKQLVFGAAD 674
G L++HP L G+AD
Sbjct: 132 HEGPIRSLDFHP-LEFLLATGSAD 154
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
++ SG+IK+WD E ++ + + H+ + F E +ASG SD N+++WD+
Sbjct: 73 VLAGASSGVIKLWDVEEAKMVRAF-TGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRK 131
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
C + +G S + + PD + +V G D+
Sbjct: 132 KGCIQTYKGHSRGISTIRFTPD-GRWVVSGGLDN 164
Score = 48.0 bits (109), Expect = 6e-06
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
I T + + + +V+ ++K+WD G L ++ H+GP+ L F + +A+G
Sbjct: 145 ISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKF-HEGPIRSLDFHPLEFLLATGS 203
Query: 540 SDGNVRLWDVGHNTCTSSLR-GAMGVFSVLEYHPDSSKQLVFGAADD 677
+D V+ WD+ S R A GV S+ ++HPD + +F DD
Sbjct: 204 ADRTVKFWDLETFELIGSTRPEATGVRSI-KFHPDG--RTLFCGLDD 247
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V +AFDS + + +G S G ++LWDV + G S +E+HP + L
Sbjct: 57 HTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHP-FGEFL 115
Query: 657 VFGAAD 674
G++D
Sbjct: 116 ASGSSD 121
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+K+WD ++ ++ +G + + F + SGG D V++WD+ +
Sbjct: 124 LKIWDIRKKGCIQTYKGHSRG-ISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKF 182
Query: 603 AMGVFSVLEYHPDSSKQLVFGAAD 674
G L++HP L G+AD
Sbjct: 183 HEGPIRSLDFHP-LEFLLATGSAD 205
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 513 TDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAA 671
T +GG D V LW +G T SL G + + DS++ LV A
Sbjct: 27 TSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSVAF--DSAEVLVLAGA 77
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+Y S + ++T L+K+W ET + L R H+G + LA S + +AS
Sbjct: 308 VYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRG-HEGDITDLAVSSNNALVASAS 366
Query: 540 SDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP-DSSKQLVFGAADD 677
+D +R+W + S LRG G + + + P +S + ++DD
Sbjct: 367 NDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDD 413
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +3
Query: 285 KVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKI 464
++V++ ++ T+L + E D I +S +N + +A +I++W G+ + +
Sbjct: 327 RLVKIWSMETALCLASCRGH-EGD-ITDLAVSSNNALVASASNDFVIRVWRLPDGMPISV 384
Query: 465 WRSSHKGPVVKLAFDSTDENI---ASGGSDGNVRLWDVGHN 578
R H G V +AF ++ S DG R+WD ++
Sbjct: 385 LRG-HTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYS 424
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/93 (26%), Positives = 46/93 (49%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
+ ++ G++K+WD TG + + K ++ +ASG D +V+LW++
Sbjct: 769 LASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINE 828
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
C ++R V V ++ P SS L FG++D
Sbjct: 829 RNCLGTIRNIANVCCV-QFSPQSSHLLAFGSSD 860
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/99 (30%), Positives = 49/99 (49%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S ++ + + G I++WD E G ++ +SHKG V L ++ +ASG D ++
Sbjct: 73 SSASSLVAVGYADGSIRIWDTEKGT-CEVNFNSHKGAVTALRYNKVGSMLASGSKDNDII 131
Query: 558 LWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
LWDV + LRG + L + D K+LV + D
Sbjct: 132 LWDVVGESGLFRLRGHRDQVTDLVF-LDGGKKLVSSSKD 169
Score = 37.1 bits (82), Expect = 0.011
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 318 LIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRS--SHKGPV 491
L + + ND + IS + I A +K++ ++ LK + S HK PV
Sbjct: 529 LTVSNVKSMKMNDDVLAVAISPDAKHIAVALLDSTVKVFYMDS---LKFYLSLYGHKLPV 585
Query: 492 VKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSL 596
+ + S E I +G D N+++W + C S+
Sbjct: 586 MCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSI 620
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIAS 533
DQ+ + +V++ K +++WD ET ++I S H V + D + + +
Sbjct: 149 DQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQI-VSGHHSEVWSVDTDPEERYVVT 207
Query: 534 GGSDGNVRLWDVGHNTCTSSL 596
G +D +R + V + SL
Sbjct: 208 GSADQELRFYAVKEYSSNGSL 228
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +3
Query: 345 AENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN 524
A D + K + + + K L+K WD + L + H + LA + +
Sbjct: 622 AHGDSVMGVKFVRNTHYLFSIGKDRLVKYWDADKFEHL-LTLEGHHAEIWCLAISNRGDF 680
Query: 525 IASGGSDGNVRLWD 566
+ +G D ++R WD
Sbjct: 681 LVTGSHDRSMRRWD 694
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +3
Query: 393 SIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
++ +A +K+WD E G L + + H+ PV LAF E IASG D ++ +W +
Sbjct: 513 TLASASFDSTVKLWDAELGKMLCSF-NGHREPVYSLAFSPNGEYIASGSLDKSIHIWSIK 571
Query: 573 HNTCTSSLRGAMGVFSV 623
+ G G+F V
Sbjct: 572 EGKIVKTYTGNGGIFEV 588
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = +3
Query: 279 AIKVVEVDTLITSLII--GETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGV 452
+ K V I +LI+ + + + ++ + T + + T G ++W
Sbjct: 298 SFKAVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNG-- 355
Query: 453 QLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+L S HKGP+ L ++ + + +G D +WDV
Sbjct: 356 ELISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDV 394
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLR 599
+ H+G V + +D T +AS D ++W++ +T LR
Sbjct: 445 TGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLR 487
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+Y + S + ++T L+K+W +T L R H+G + LA S + IAS
Sbjct: 248 VYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRG-HEGDITDLAVSSNNIFIASAS 306
Query: 540 SDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP-DSSKQLVFGAADD 677
+D +R+W + S LRG G + + + P S + ++DD
Sbjct: 307 NDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDD 353
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
I T +++WD +TG ++I+ H+ V+ LA +ASG DG + +WD+
Sbjct: 514 IATGSSDKTVRLWDVQTGECVRIF-IGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLST 572
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
C + L G L Y + S L G+AD
Sbjct: 573 ARCITPLMGHNSCVWSLSYSGEGS-LLASGSAD 604
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+ + +S + + + + G I MWD T + H V L++ +ASG
Sbjct: 544 VLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMG-HNSCVWSLSYSGEGSLLASGS 602
Query: 540 SDGNVRLWDVGHNT 581
+D V+LWDV +T
Sbjct: 603 ADCTVKLWDVTSST 616
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHN 578
H GPV F + + S +D +RLW N
Sbjct: 417 HSGPVYSATFSPPGDFVLSSSADTTIRLWSTKLN 450
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/88 (30%), Positives = 44/88 (50%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSS 593
SG IK+WD E ++ + H+ V + F E ASG D N+++WD+ C +
Sbjct: 173 SGTIKLWDLEEAKVVRTL-TGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 231
Query: 594 LRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+G +VL + PD + +V G D+
Sbjct: 232 YKGHTRGVNVLRFTPD-GRWIVSGGEDN 258
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
IV+ + ++K+WD G L ++S H+G + L F + +A+G +D V+ WD+
Sbjct: 251 IVSGGEDNVVKVWDLTAGKLLHEFKS-HEGKIQSLDFHPHEFLLATGSADKTVKFWDL 307
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +3
Query: 306 LITSLIIGETEEDAENDQIYTFKISH-SNQSIVTAHKSGLIKMWD-KETGVQLKIWRSSH 479
++ SLI E A + + KI S++ +VT + + +W + L ++ H
Sbjct: 94 ILFSLISSFREFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLY--GH 151
Query: 480 KGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
+ + FD+++ +A+G + G ++LWD+ +L G + +HP
Sbjct: 152 SSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHP 204
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+K+WD + ++ +G V L F I SGG D V++WD+ +
Sbjct: 218 LKIWDIRKKGCIHTYKGHTRGVNV-LRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKS 276
Query: 603 AMGVFSVLEYHPDSSKQLVFGAAD 674
G L++HP L G+AD
Sbjct: 277 HEGKIQSLDFHPHEF-LLATGSAD 299
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRS--SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCT 587
SG IK+WD E + KI R+ H+ + + F E ASG D N+++WD+ C
Sbjct: 80 SGTIKLWDLE---EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136
Query: 588 SSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ +G +VL + PD + +V G D+
Sbjct: 137 HTYKGHTRGVNVLRFTPD-GRWVVSGGEDN 165
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+V+ + ++K+WD G L ++S H+G + L F + +A+G +D V+ WD+
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKS-HEGQIQSLDFHPHEFLLATGSADRTVKFWDL 214
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWD-KETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
S++ +VT + + +W + L ++ H + + FD+++ +A+G + G ++L
Sbjct: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLY--GHSSGIDSVTFDASEVLVAAGAASGTIKL 85
Query: 561 WDVGHNTCTSSLRGAMGVFSVLEYHP 638
WD+ +L G +++HP
Sbjct: 86 WDLEEAKIVRTLTGHRSNCISVDFHP 111
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+K+WD + ++ +G V L F + SGG D V++WD+ + +
Sbjct: 125 LKIWDIRKKGCIHTYKGHTRGVNV-LRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 603 AMGVFSVLEYHPDSSKQLVFGAAD 674
G L++HP L G+AD
Sbjct: 184 HEGQIQSLDFHPHEF-LLATGSAD 206
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRS--SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCT 587
SG IK+WD E + KI R+ H+ + + F E ASG D N+++WD+ C
Sbjct: 80 SGTIKLWDLE---EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136
Query: 588 SSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ +G +VL + PD + +V G D+
Sbjct: 137 HTYKGHTRGVNVLRFTPD-GRWVVSGGEDN 165
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+V+ + ++K+WD G L ++S H+G + L F + +A+G +D V+ WD+
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKS-HEGQIQSLDFHPHEFLLATGSADRTVKFWDL 214
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWD-KETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
S++ +VT + + +W + L ++ H + + FD+++ +A+G + G ++L
Sbjct: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLY--GHSSGIDSVTFDASEVLVAAGAASGTIKL 85
Query: 561 WDVGHNTCTSSLRGAMGVFSVLEYHP 638
WD+ +L G +++HP
Sbjct: 86 WDLEEAKIVRTLTGHRSNCISVDFHP 111
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+K+WD + ++ +G V L F + SGG D V++WD+ + +
Sbjct: 125 LKIWDIRKKGCIHTYKGHTRGVNV-LRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 603 AMGVFSVLEYHPDSSKQLVFGAAD 674
G L++HP L G+AD
Sbjct: 184 HEGQIQSLDFHPHEF-LLATGSAD 206
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/115 (27%), Positives = 50/115 (43%)
Frame = +3
Query: 315 SLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVV 494
S ++ E + A + + Q IVTA I D ETG Q+ ++H+ V
Sbjct: 39 SSLVRERKVRAHKESCRAVRFIDDGQRIVTASADCSILATDVETGAQVAHLENAHEDAVN 98
Query: 495 KLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLV 659
L + T+ IASG G V++WD +C+ S + + DS K +V
Sbjct: 99 TL-INVTETTIASGDDKGCVKIWDTRQRSCSHEFNAHEDYISGMTFASDSMKLVV 152
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/115 (21%), Positives = 57/115 (49%)
Frame = +3
Query: 333 TEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDS 512
T+ + +++++ I+ + SG+I++WD G + + H+GPV + F +
Sbjct: 3 TKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHEGPVRGVHFHN 61
Query: 513 TDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ SGG D +++W+ + C +L G + +++H ++ + A+DD
Sbjct: 62 SQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHEN--PWIVSASDD 114
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIAS 533
D I T + H N IV+A I++W+ ++ + + + H V+ +F ++ + S
Sbjct: 94 DYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVL-TGHNHYVMCASFHPKEDLVVS 152
Query: 534 GGSDGNVRLWDVG 572
D VR+WD+G
Sbjct: 153 ASLDQTVRVWDIG 165
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWR----SSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
IV+ +K+W + K W H V + F + + I S D ++R+W
Sbjct: 219 IVSGADDRQVKLWRMN---ETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVW 275
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHPD 641
D T + R F +L HP+
Sbjct: 276 DATKRTGIQTFRREHDRFWILAVHPE 301
Score = 31.5 bits (68), Expect = 0.53
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Frame = +3
Query: 381 HSNQSI-VTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
H++Q + V+ IK+W+ +T L H + + F + I S D +R
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKTHRCL-FTLLGHLDYIRTVQFHHENPWIVSASDDQTIR 118
Query: 558 LWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+W+ TC S L G +HP + LV A+ D
Sbjct: 119 IWNWQSRTCISVLTGHNHYVMCASFHP--KEDLVVSASLD 156
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/115 (21%), Positives = 57/115 (49%)
Frame = +3
Query: 333 TEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDS 512
T+ + +++++ I+ + SG+I++WD G + + H+GPV + F +
Sbjct: 3 TKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRF-DEHEGPVRGVHFHN 61
Query: 513 TDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ SGG D +++W+ ++ C +L G + +++H + + A+DD
Sbjct: 62 SQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHE--YPWIVSASDD 114
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIAS 533
D I T + H IV+A I++W+ ++ + + + H V+ +F ++ + S
Sbjct: 94 DYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVL-TGHNHYVMCASFHPKEDLVVS 152
Query: 534 GGSDGNVRLWDVG 572
D VR+WD+G
Sbjct: 153 ASLDQTVRVWDIG 165
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWR----SSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
IV+ +K+W + K W H V + F + + I S D ++R+W
Sbjct: 219 IVSGADDRQVKLWRMN---ETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVW 275
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHPD 641
D T + R F +L HP+
Sbjct: 276 DATKRTGLQTFRREHDRFWILAVHPE 301
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
I S D +R+W+ TC S L G +HP + LV A+ D
Sbjct: 108 IVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHP--KEDLVVSASLD 156
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 48.8 bits (111), Expect = 3e-06
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +3
Query: 231 IQWTNDG-LQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTA 407
+++++DG L D+ I+ ++T+ + E + I S + IV+A
Sbjct: 30 VKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSA 89
Query: 408 HKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCT 587
+K+WD ETG +K H + F+ I SG D VR+WDV C
Sbjct: 90 SDDKTLKLWDVETGSLIKT-LIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCL 148
Query: 588 SSLRGAMGVFSVLEYHPDSS 647
L + ++++ D S
Sbjct: 149 KVLPAHSDPVTAVDFNRDGS 168
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPV-VKLAFDSTD 518
D EN + + S + + I+ +++W+ + LK + + AF T+
Sbjct: 195 DDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTN 254
Query: 519 -ENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
+ I SG D V +W++ L G + HP
Sbjct: 255 GKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHP 295
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
+ + IV+ + + MW+ + L+ H V+ +A T+ IASG D VR+W
Sbjct: 254 NGKRIVSGSEDNCVHMWELNSKKLLQKLEG-HTETVMNVACHPTENLIASGSLDKTVRIW 312
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
SN+ T IK+WD TGV LK+ + H G V LA + + S G D V+ W
Sbjct: 181 SNEWFCTGSADRTIKIWDVATGV-LKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCW 239
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHP 638
D+ N S G + L HP
Sbjct: 240 DLEQNKVIRSYHGHLHGVYCLALHP 264
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/106 (17%), Positives = 44/106 (41%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+Y + + ++T + + ++WD T +Q+ + H V + TD + +G
Sbjct: 257 VYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVL--PHDSDVFSVLARPTDPQVITGS 314
Query: 540 SDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
D ++ WD+ + +++ + HP V +AD+
Sbjct: 315 HDSTIKFWDLRYGKSMATITNHKKTVRAMALHP-KENDFVSASADN 359
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/134 (25%), Positives = 56/134 (41%)
Frame = +3
Query: 273 DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGV 452
D IK+ +V T + L + Q+ +S+ + + +A +K WD E
Sbjct: 191 DRTIKIWDVATGVLKLTL-----TGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNK 245
Query: 453 QLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEY 632
++ + H V LA T + + +GG D R+WD+ L VFSVL
Sbjct: 246 VIRSYHG-HLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLAR 304
Query: 633 HPDSSKQLVFGAAD 674
D Q++ G+ D
Sbjct: 305 PTD--PQVITGSHD 316
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H G V +AFD ++E +G +D +++WDV +L G +G V +
Sbjct: 169 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIG--QVRGLAVSNRHTY 226
Query: 657 VFGAADD 677
+F A DD
Sbjct: 227 MFSAGDD 233
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNV 554
S+ + +++ G++++WD QL H+ V + + S D + ASG DG+V
Sbjct: 543 SYIKSQVASSNFEGVVQVWDVARN-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV 601
Query: 555 RLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
+LW + +++ + V ++ ++ + L FG+AD
Sbjct: 602 KLWSINQGVSIGTIKTKANICCV-QFPSETGRSLAFGSAD 640
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNV 554
S+ + +++ G++++WD QL H+ V + + S D + ASG DG+V
Sbjct: 543 SYIKSQVASSNFEGVVQVWDVARN-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV 601
Query: 555 RLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
+LW + +++ + V ++ ++ + L FG+AD
Sbjct: 602 KLWSINQGVSIGTIKTKANICCV-QFPSETGRSLAFGSAD 640
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIAS 533
+ +Y ++ + +V+ ++++WD TG + R H V L DST S
Sbjct: 214 ESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRG-HTDNVRVLLLDSTGRFCLS 272
Query: 534 GGSDGNVRLWDVGHNTC 584
G SD +RLWD+G C
Sbjct: 273 GSSDSMIRLWDLGQQRC 289
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
HK V LA + T + SGG++ +R+WD + + LRG
Sbjct: 212 HKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRG 253
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 393 SIVTAHKSGLIKMWDK-ETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNVRLWD 566
++V+ +K WD GV + R H V LA + + N+ ASGG G V +WD
Sbjct: 97 TLVSCSSDTTVKTWDGLSDGVCTRTLRQ-HSDYVTCLAVAAKNNNVVASGGLGGEVFIWD 155
Query: 567 V 569
+
Sbjct: 156 I 156
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIAS 533
+ +Y ++ + +V+ ++++WD TG + R H V L DST S
Sbjct: 214 ESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRG-HTDNVRVLLLDSTGRFCLS 272
Query: 534 GGSDGNVRLWDVGHNTC 584
G SD +RLWD+G C
Sbjct: 273 GSSDSMIRLWDLGQQRC 289
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
HK V LA + T + SGG++ +R+WD + + LRG
Sbjct: 212 HKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRG 253
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 393 SIVTAHKSGLIKMWDK-ETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNVRLWD 566
++V+ +K WD GV + R H V LA + + N+ ASGG G V +WD
Sbjct: 97 TLVSCSSDTTVKTWDGLSDGVCTRTLRQ-HSDYVTCLAVAAKNNNVVASGGLGGEVFIWD 155
Query: 567 V 569
+
Sbjct: 156 I 156
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 1/147 (0%)
Frame = +3
Query: 228 DIQWTNDGLQMLCLC-DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVT 404
D+ WT+DG Q++ D+ ++ +V+T + E + I++
Sbjct: 101 DLHWTSDGSQIVSASPDKTVRAWDVETGKQIKKMAEHSSFVNS----CCPTRRGPPLIIS 156
Query: 405 AHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTC 584
G K+WD ++ + ++ + ++F + I +GG D +V++WD+
Sbjct: 157 GSDDGTAKLWDMRQRGAIQTFPDKYQ--ITAVSFSDAADKIFTGGVDNDVKVWDLRKGEA 214
Query: 585 TSSLRGAMGVFSVLEYHPDSSKQLVFG 665
T +L G + + PD S L G
Sbjct: 215 TMTLEGHQDTITGMSLSPDGSYLLTNG 241
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+YT K + + I + I +W + + HK ++ L + S I S
Sbjct: 56 VYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSAS 115
Query: 540 SDGNVRLWDV 569
D VR WDV
Sbjct: 116 PDKTVRAWDV 125
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS--SLRGAMGVFSVLEYHPDS 644
S H V + F+ IASG D + LW V H C + L+G L + D
Sbjct: 50 SGHPSAVYTMKFNPAGTLIASGSHDREIFLWRV-HGDCKNFMVLKGHKNAILDLHWTSDG 108
Query: 645 SKQLVFGAAD 674
S Q+V + D
Sbjct: 109 S-QIVSASPD 117
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Frame = +3
Query: 228 DIQWTNDGLQMLCLC-DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVT 404
DI T+DG ++ +C D I + + + + LI E D I +F +S+ N+ I+
Sbjct: 408 DIAMTDDGKWLVSVCKDSVISLFDREATVERLI-------EEEDMITSFSLSNDNKYILV 460
Query: 405 AHKSGLIKMWDKETGVQLKIWRSSHKGP--VVKLAFDSTDEN-IASGGSDGNVRLWDVGH 575
+ I++W+ E ++ HK +++ F + IASG D V +W
Sbjct: 461 NLLNQEIRLWNIEGDPKIVSRYKGHKRSRFIIRSCFGGYKQAFIASGSEDSQVYIWHRST 520
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
L G G + + + P ++ ++ A+DD
Sbjct: 521 GKLIVELPGHAGAVNCVSWSP-TNLHMLASASDD 553
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWD--KETGVQLKIWRSSHKGPVVKLAFDST 515
++ D+++ + SH+ + + ++ K +W+ + + LK H PV+ + +
Sbjct: 271 ESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSPD 330
Query: 516 DENIASGGSDGNVRLWDVGHNTCTSSL-RGAMGVFSVLEYHPDSSKQLVFGAAD 674
D + + G++ +R WDV C +G + S ++PD + ++ G D
Sbjct: 331 DRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPIS-CGWYPD-GQGIIAGMTD 382
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN-IASGGSDGNVRLW 563
I + + + +W + TG +L + H G V +++ T+ + +AS DG +R+W
Sbjct: 504 IASGSEDSQVYIWHRSTG-KLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIW 559
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/85 (32%), Positives = 37/85 (43%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
SN+ T IK+WD TGV LK+ + H V LA + + S G D V+ W
Sbjct: 187 SNEWFCTGSADRTIKIWDVATGV-LKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCW 245
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHP 638
D+ N S G + L HP
Sbjct: 246 DLEQNKVIRSYHGHLSGVYCLALHP 270
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/93 (20%), Positives = 39/93 (41%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+Y + + ++T + + ++WD T +Q+ S H V + TD + +G
Sbjct: 263 VYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQI-FALSGHDNTVCSVFTRPTDPQVVTGS 321
Query: 540 SDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
D ++ WD+ + S+L + HP
Sbjct: 322 HDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHP 354
Score = 35.9 bits (79), Expect = 0.025
Identities = 31/134 (23%), Positives = 56/134 (41%)
Frame = +3
Query: 273 DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGV 452
D IK+ +V T + L + +Q+ +S+ + + +A +K WD E
Sbjct: 197 DRTIKIWDVATGVLKLTL-----TGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNK 251
Query: 453 QLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEY 632
++ + H V LA T + + +GG D R+WD+ +L G +
Sbjct: 252 VIRSYHG-HLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFT 310
Query: 633 HPDSSKQLVFGAAD 674
P + Q+V G+ D
Sbjct: 311 RP-TDPQVVTGSHD 323
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
H G V +AFD ++E +G +D +++WDV +L G
Sbjct: 175 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTG 216
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 44.8 bits (101), Expect = 5e-05
Identities = 28/88 (31%), Positives = 41/88 (46%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
IVTA I D ETG Q+ ++H+ V L + T+ IASG G V++WD
Sbjct: 9 IVTASADCSILATDVETGAQVAHLENAHEDAVNTL-INVTETTIASGDDKGCVKIWDTRQ 67
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLV 659
+C+ S + + DS K +V
Sbjct: 68 RSCSHEFNAHEDYISGMTFASDSMKLVV 95
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/112 (20%), Positives = 44/112 (39%)
Frame = +3
Query: 339 EDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTD 518
++ + +Y + L ++WD TG + +++ H PV + F
Sbjct: 377 QEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQG-HIKPVFSVNFSPNG 435
Query: 519 ENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
++ASGG D R+WD+ + + S ++Y P L + D
Sbjct: 436 YHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYD 487
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/93 (22%), Positives = 37/93 (39%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S + + T SG+ K+W+ HK + F D+ +A+ +D +
Sbjct: 264 SRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAK 323
Query: 558 LWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
LW T + G + + + +HP S K L
Sbjct: 324 LWKT-DGTLLQTFEGHLDRLARVAFHP-SGKYL 354
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/93 (23%), Positives = 45/93 (48%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
I +A +++W+ TG + ++R H GPV ++++ + + SG D +++W++
Sbjct: 375 IASASFDKSVRLWNGITGQFVTVFRG-HVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRT 433
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
L G +++ PD K +V G D
Sbjct: 434 KKLKQDLPGHADEVFAVDWSPDGEK-VVSGGKD 465
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSK 650
+ H V+ ++F + +ASG D VRLWD+ T + +G + + PD K
Sbjct: 106 AGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPD-GK 164
Query: 651 QLVFGA 668
LV G+
Sbjct: 165 HLVSGS 170
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
+Y S ++ +++ K +K+W+ T +LK H V + + E + SGG
Sbjct: 405 VYQVSWSADSRLLLSGSKDSTLKIWEIRTK-KLKQDLPGHADEVFAVDWSPDGEKVVSGG 463
Query: 540 SDGNVRLW 563
D ++LW
Sbjct: 464 KDRVLKLW 471
Score = 31.9 bits (69), Expect = 0.40
Identities = 27/113 (23%), Positives = 48/113 (42%)
Frame = +3
Query: 336 EEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDST 515
EE + + Y S + +V+ + +W+ Q K + H+ V + F
Sbjct: 312 EEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPD 371
Query: 516 DENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
+ IAS D +VRLW+ + RG +G + + D S+ L+ G+ D
Sbjct: 372 GKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSAD-SRLLLSGSKD 423
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFD-----STDEN 524
+ T S + +V+ KSG I W+ + G + HK + ++++ S
Sbjct: 154 VLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRR 213
Query: 525 IASGGSDGNVRLWDV 569
+ DG+ R+WD+
Sbjct: 214 FVTSSKDGDARIWDI 228
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +3
Query: 345 AENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN 524
A + I + SH+ +V+ G +K W +K +++HK + L+F TD
Sbjct: 163 AHDQPIRSMVWSHNENYMVSGDDGGTLKYWQNNMN-NVKANKTAHKESIRDLSFCKTDLK 221
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMG 611
S D V++WD SSL G +G
Sbjct: 222 FCSCSDDTTVKVWDFTKCVDESSLTGYIG 250
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDST-DENIASG 536
+ + K + + ++TA K +IK++D T +L+ +R H V LA+ +E SG
Sbjct: 313 VLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRG-HTKDVTSLAWHPCHEEYFVSG 371
Query: 537 GSDGNVRLWDVGH 575
SDG++ W VGH
Sbjct: 372 SSDGSICHWIVGH 384
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +3
Query: 381 HSNQSI-VTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
H +S+ V+ K L+K+WD +G +L HK V+ + ++ + + D ++
Sbjct: 277 HPTKSLLVSGGKDQLVKLWDTRSGRELCSLHG-HKNIVLSVKWNQNGNWLLTASKDQIIK 335
Query: 558 LWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
L+D+ S RG + L +HP + V G++D
Sbjct: 336 LYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSD 374
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDE-NIASGGSDGNVRLWDVGHNTCTS 590
SG+++++D + + L+ RS H P + + D+ ++ SGG DG V+ WDV T S
Sbjct: 114 SGVVQVFDIKERMALRTLRS-HSAPARFVKYPVQDKLHLVSGGDDGVVKYWDVAGATVIS 172
Query: 591 SLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
L G + P + LV G+ D
Sbjct: 173 DLLGHKDYVRCGDCSPVNDSMLVTGSYD 200
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
Frame = +3
Query: 267 LCDEAIKV-VEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKE 443
+C E V VE D + T + + + N Q++ + S+ + +
Sbjct: 54 ICREIAGVAVEHDGIWTPPLAVSFCKTSRNSQLFAVSDEDGHVSLFNSSSKKFASSATHQ 113
Query: 444 TGVQLKIWRS--SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVF 617
+ +R +H + +++ D + + D +++WDV N CT L G G
Sbjct: 114 ENTEKARFRDWIAHYNAIFDISWIKGDSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTV 173
Query: 618 SVLEYHPDSSKQLVFGAAD 674
+ HP +S LV G+ D
Sbjct: 174 KSMCSHPTNSDLLVSGSRD 192
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 375 ISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTD-ENIASGGSDGN 551
IS + +++ G +W I H V + + ++ +A+ D
Sbjct: 346 ISPDGEYVLSGSSDGNAYIWQVNKPQVDPIILKGHDFEVTAVDWSPSEIGKVATASDDFT 405
Query: 552 VRLWDVGHNTCTSS 593
VRLW++ +N CT++
Sbjct: 406 VRLWNIENNICTNA 419
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
SG I +W+ TG LK W ++ V L F D + SG DG++R+W +
Sbjct: 99 SGDIYLWEVATGKLLKKWHGHYRS-VTCLVFSGDDSLLVSGSQDGSIRVWSL 149
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/97 (24%), Positives = 41/97 (42%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
++ + + SG I W T Q ++ +S P+ LA ++ + GG G++ LW
Sbjct: 48 ASSQLSARNTSGSIFYWSW-TKPQAEV-KSYPVEPIKALAANNEGTYLVGGGISGDIYLW 105
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
+V G + L + D S LV G+ D
Sbjct: 106 EVATGKLLKKWHGHYRSVTCLVFSGDDS-LLVSGSQD 141
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
S V + ++++D TG ++ H GPV + F T E+ ASG DG +R+W
Sbjct: 239 SGNKFVAGGEDMWVRLFDFHTGKEIGC-NKGHHGPVHCVRFAPTGESYASGSEDGTIRIW 297
Query: 564 DVG 572
G
Sbjct: 298 QTG 300
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
+++A K + + ETG + + HKG V D+ AS +D + +LWD
Sbjct: 34 LISASKDSQPMLRNGETGDWIGTFEG-HKGAVWSSCLDNNALRAASASADFSAKLWD 89
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCT-SSLR 599
I +W K+TG Q+K S H+ PV L F + +AS D VRLWDV + T + R
Sbjct: 459 IFVWSKKTG-QIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFR 517
Query: 600 GAMGVFSVLEYHPDSSKQLVFGAAD 674
V +V + PD KQL D
Sbjct: 518 HNHDVLTV-AFRPD-GKQLASSTLD 540
Score = 33.9 bits (74), Expect = 0.099
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S +Q + T +K+W+ +G I + H V L F + + ++ S DG VR
Sbjct: 358 SPDSQLLATGADDNKVKVWNVMSGTCF-ITFTEHTNAVTALHFMADNHSLLSASLDGTVR 416
Query: 558 LWD 566
WD
Sbjct: 417 AWD 419
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
K G + +WD T + + + H V + + + +A+G D V++W+V TC
Sbjct: 327 KLGQLLVWDWRTETYI-LKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFI 385
Query: 591 SLRGAMGVFSVLEYHPDSSKQL 656
+ + L + D+ L
Sbjct: 386 TFTEHTNAVTALHFMADNHSLL 407
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 42.3 bits (95), Expect = 3e-04
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCT-SSLR 599
I +W K+TG Q+K S H+ PV L F + +AS D VRLWDV + T + R
Sbjct: 499 IFVWSKKTG-QIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFR 557
Query: 600 GAMGVFSVLEYHPDSSKQLVFGAAD 674
V +V + PD KQL D
Sbjct: 558 HNHDVLTV-AFRPD-GKQLASSTLD 580
Score = 33.9 bits (74), Expect = 0.099
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S +Q + T +K+W+ +G I + H V L F + + ++ S DG VR
Sbjct: 398 SPDSQLLATGADDNKVKVWNVMSGTCF-ITFTEHTNAVTALHFMADNHSLLSASLDGTVR 456
Query: 558 LWD 566
WD
Sbjct: 457 AWD 459
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
K G + +WD T + + + H V + + + +A+G D V++W+V TC
Sbjct: 367 KLGQLLVWDWRTETYI-LKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFI 425
Query: 591 SLRGAMGVFSVLEYHPDSSKQL 656
+ + L + D+ L
Sbjct: 426 TFTEHTNAVTALHFMADNHSLL 447
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
+V+ +G ++ WD E G L+ S+HKG V LA + + S G+DG V L+ +
Sbjct: 262 LVSGDSTGTVQFWDSEHGTLLEA-HSNHKGDVNTLAAAPSHNRVFSAGADGQVILYKLSG 320
Query: 576 NT 581
+T
Sbjct: 321 ST 322
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +3
Query: 324 IGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHK--GPVVK 497
IG E+ +++D+ + ++ + A G ++++ +L +RS + G +
Sbjct: 144 IGSEEDGSDSDEFHEKSEEEIDRILAAACDDGCVRLYRISNLEKLTYYRSLPRVSGRALS 203
Query: 498 LAFDSTDENIASGGSDGNVRLWD 566
+ + + I SG SDG +R WD
Sbjct: 204 VTWSPDAKRIFSGSSDGLIRCWD 226
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 465 WRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
W+ S PVV LA S D +A+ DG++ +W
Sbjct: 11 WKPS---PVVALANSSDDSQVAAAREDGSLEIW 40
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ SG S G V+ WD H T + G + L P ++ VF A D
Sbjct: 262 LVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAPSHNR--VFSAGAD 310
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLK--IWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
NQ+IV+ + I++WD ETG LK HK + L + D + +G D +L
Sbjct: 187 NQTIVSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKL 246
Query: 561 WDV 569
WD+
Sbjct: 247 WDM 249
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 402 TAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
T H++G + +T +Q +I H GP+ LAF ++ +SGG DG VRL
Sbjct: 290 TDHRAGKFEAKFYDTILQEEIGGVKGHFGPINALAFSPDGKSFSSGGEDGYVRL 343
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 429 MWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+W + G +L +R H G V + +G +D +LWDV
Sbjct: 63 VWFADNGERLGTYRG-HSGAVWCCDISRDSSRLITGSADQTAKLWDV 108
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLK--IWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
NQ+IV+ + +I++WD ETG LK HK + L + D + +G D +L
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 561 WDV 569
WD+
Sbjct: 220 WDM 222
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 429 MWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+W + G +L +R H G V + +G +D +LWDV
Sbjct: 36 LWFADNGERLGTYRG-HNGAVWCCDVSRDSSRLITGSADQTAKLWDV 81
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLK--IWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
NQ+IV+ + +I++WD ETG LK HK + L + D + +G D +L
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 561 WDV 569
WD+
Sbjct: 220 WDM 222
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 402 TAHKSGLI--KMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
T H++G K +DK ++ + H GP+ LAF+ ++ +SGG DG VRL
Sbjct: 263 TDHRAGKFEAKFYDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRL 316
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 429 MWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+W + G +L +R H G V + +G +D +LWDV
Sbjct: 36 LWFADNGERLGTYRG-HNGAVWCCDVSRDSSRLITGSADQTAKLWDV 81
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLK--IWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
NQ+IV+ + +I++WD ETG LK HK + L + D + +G D +L
Sbjct: 160 NQTIVSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKL 219
Query: 561 WDV 569
WD+
Sbjct: 220 WDM 222
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 402 TAHKSGLI--KMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
T H++G K +DK ++ + H GP+ LAF+ ++ +SGG DG VRL
Sbjct: 263 TDHRAGKFEAKFYDKILQEEIGGVKG-HFGPINALAFNPDGKSFSSGGEDGYVRL 316
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 429 MWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+W + G +L +R H G V + +G +D +LWDV
Sbjct: 36 LWFADNGERLGTYRG-HNGAVWCCDVSRDSSRLITGSADQTAKLWDV 81
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
+V+ +G ++ WD + G L+ S+HKG V LA + + S G+DG V L+ +
Sbjct: 262 LVSGDSTGSVQFWDSQHGTLLQA-HSNHKGDVNALAASPSHNRVFSAGADGQVILYKLSG 320
Query: 576 NTCTS 590
T S
Sbjct: 321 GTSRS 325
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +3
Query: 336 EEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHK--GPVVKLAFD 509
E+D+E D++ K+ ++ + A G ++++ +L +RS + G + + +
Sbjct: 149 EDDSELDELDE-KVEALDRHLAAACDDGCVRIYYISESDKLTYYRSLPRVTGRALSVTWS 207
Query: 510 STDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGV 614
+ + I SG SDG +R WD N C R +G+
Sbjct: 208 ADAQRIFSGSSDGLIRCWDA--NLCHEVYRITVGL 240
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ SG S G+V+ WD H T + G + L P ++ VF A D
Sbjct: 262 LVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASPSHNR--VFSAGAD 310
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTC 584
H G V ++ DS+ E IASG +DG+VR+W+V C
Sbjct: 422 HTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRC 457
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWR 470
S + I + G ++MW+ ETG LK+W+
Sbjct: 434 SGEWIASGSTDGSVRMWEVETGRCLKVWQ 462
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDE 521
+A +D I + + ++++ LIK+WD E G H V+++ F+ D
Sbjct: 96 EAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDT 155
Query: 522 N-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
N AS D +++W++G +L + ++Y K + +DD
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPD 641
+ +G D ++WD +C +L G S + +HP+
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDE 521
+A +D I + + ++++ LIK+WD E G H V+++ F+ D
Sbjct: 96 EAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDT 155
Query: 522 N-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
N AS D +++W++G +L + ++Y K + +DD
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPD 641
+ +G D ++WD +C +L G S + +HP+
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDE 521
+A +D I + + ++++ LIK+WD E G H V+++ F+ D
Sbjct: 96 EAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDT 155
Query: 522 N-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
N AS D +++W++G +L + ++Y K + +DD
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPD 641
+ +G D ++WD +C +L G S + +HP+
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPE 240
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 40.7 bits (91), Expect = 9e-04
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNV 554
S+ +TA IK WD ETG + + + VVKL D +NI +G SD +
Sbjct: 335 SNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 394
Query: 555 RLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
WD+ T +G + + + D++++ V + D
Sbjct: 395 VQWDINTGEVTQEYDQHLGAVNTITF-VDNNRRFVTSSDD 433
Score = 31.1 bits (67), Expect = 0.70
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +3
Query: 228 DIQWTNDGLQMLCL-CDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVT 404
DI ++NDG + L D+ IK + +T +I T + + Q+I+
Sbjct: 331 DICFSNDGSKFLTAGYDKNIKYWDTET---GQVIS-TFSTGKIPYVVKLNPDDDKQNILL 386
Query: 405 AHKSGL-IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
A S I WD TG + + H G V + F + + D ++R+W+ G
Sbjct: 387 AGMSDKKIVQWDINTGEVTQEY-DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG 442
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/79 (22%), Positives = 39/79 (49%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
++ + + IV+ I++W+ +TG +++ ++ H P+ + F+ I S
Sbjct: 131 VFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKA-HSMPISSVHFNRDGSLIVSAS 189
Query: 540 SDGNVRLWDVGHNTCTSSL 596
DG+ ++WD TC +L
Sbjct: 190 HDGSCKIWDAKEGTCLKTL 208
Score = 33.9 bits (74), Expect = 0.099
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRS-SHKGPVVKLAFDSTD 518
D ++ + K S + + I+ A +K+ + TG LK++ ++K + AF T+
Sbjct: 210 DDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTN 269
Query: 519 -ENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
+ I SG D V LWD+ L G + HP
Sbjct: 270 GKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHP 310
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDE 521
+A +D I + + ++++ LIK+WD E G H V+++ F+ D
Sbjct: 96 EAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDT 155
Query: 522 N-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
N AS D +++W++G +L + ++Y K + +DD
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPD 641
+ +G D ++WD +C +L G S + +HP+
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/98 (22%), Positives = 46/98 (46%)
Frame = +3
Query: 381 HSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
+++ ++ T + +KMWD +G +K S G ++ +A ++++ + S N+ +
Sbjct: 241 YNSGTLFTGGQDRAVKMWDTNSGTLIKSLYGS-LGNILDMAVTHDNKSVIAATSSNNLFV 299
Query: 561 WDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
WDV +L G ++ SS+ +V A D
Sbjct: 300 WDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYD 337
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDS-TDENIASG 536
I ++H N+S++ A S + +WD +G +++ + H V + + ++ S
Sbjct: 276 ILDMAVTHDNKSVIAATSSNNLFVWDVSSG-RVRHTLTGHTDKVCAVDVSKFSSRHVVSA 334
Query: 537 GSDGNVRLWDVGHNTCTSSL 596
D ++LWD+ CT+++
Sbjct: 335 AYDRTIKLWDLHKGYCTNTV 354
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = +3
Query: 354 DQIYTFKISH-SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIA 530
D++ +S S++ +V+A IK+WD G + + L+ D +
Sbjct: 316 DKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLSIDGL--TVF 373
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFG 665
SG DGN+RLWD+ S + G + + + ++ L G
Sbjct: 374 SGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSG 418
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMG 611
+H+G + F+ + +GG D V++WD T SL G++G
Sbjct: 229 AHEGGCGSIVFEYNSGTLFTGGQDRAVKMWDTNSGTLIKSLYGSLG 274
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 39.9 bits (89), Expect = 0.002
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Frame = +3
Query: 228 DIQWTNDGLQMLCL-CDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVT 404
D+ T DG M+ + D+ I+++ ++T + +I +E I + IS + +
Sbjct: 362 DLAVTPDGESMITVFSDKEIRILNLETKVERVI-------SEEQPITSLSISGDGKFFIV 414
Query: 405 AHKSGLIKMWDKETGVQLKIWRSSHKGP--VVKLAFDSTDEN-IASGGSDGNVRLWDVGH 575
I +WD + + S H+ V++ F D + IASG D V +W++ +
Sbjct: 415 NLSCQEIHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKN 474
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
L G + + ++P + + L A+DD
Sbjct: 475 TKPLEVLSGHSMTVNCVSWNPKNPRMLA-SASDD 507
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +3
Query: 345 AENDQIYTFKISHSNQSIVTAHKSGLIKMWD--KETGVQLKIWRSSHKGPVVKLAFDSTD 518
A ++++ + S+S + + TA +W + V+LK SH+ PV +++ D
Sbjct: 222 AHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDD 281
Query: 519 ENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSV--LEYHPDSSKQLVFGAAD 674
+ + G+ ++LWDV + F+V + PDS++ LV G++D
Sbjct: 282 TKLLTCGNAEVLKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTR-LVCGSSD 334
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +3
Query: 399 VTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHN 578
+T K I++W+ G+ +K ++S H V + S + S G D V WDV
Sbjct: 34 LTCGKDRTIRLWNPHRGILIKTYKS-HGREVRDVHVTSDNAKFCSCGGDRQVYYWDVSTG 92
Query: 579 TCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
RG G + ++++ DSS +V D
Sbjct: 93 RVIRKFRGHDGEVNAVKFN-DSSSVVVSAGFD 123
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Frame = +3
Query: 324 IGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSS-HKGPVVKL 500
IG D + IS+ ++ +++ D+ TG L++++ K
Sbjct: 175 IGREMSDNLGQPVNCISISNDGNCVLAGCLDSTLRLLDRTTGELLQVYKGHISKSFKTDC 234
Query: 501 AFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
++D ++ G DG V WD+ S R V + + YHP
Sbjct: 235 CLTNSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHP 280
Score = 33.9 bits (74), Expect = 0.099
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 432 WDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
WD TG ++ +R H G V + F+ + + S G D ++R+WD
Sbjct: 87 WDVSTGRVIRKFRG-HDGEVNAVKFNDSSSVVVSAGFDRSLRVWD 130
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 372 KISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSH-KGPVVKLAFDSTDENIASGGSDG 548
+ S + +TA K G I+++D + ++ ++H K V F + S G D
Sbjct: 181 RYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDS 240
Query: 549 NVRLWDVGHNTCTSSLRGAMGV 614
V+LW++G GA V
Sbjct: 241 TVKLWEIGSGRMVKEYLGAKRV 262
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
S + WD T ++ W S+H G + + + G D ++R W
Sbjct: 284 SNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFW 333
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 372 KISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSH-KGPVVKLAFDSTDENIASGGSDG 548
+ S + +TA K G I+++D + ++ ++H K V F + S G D
Sbjct: 273 RYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDS 332
Query: 549 NVRLWDVGHNTCTSSLRGAMGV 614
V+LW++G GA V
Sbjct: 333 TVKLWEIGSGRMVKEYLGAKRV 354
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +3
Query: 414 SGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
S + WD T ++ W S+H G + + + G D ++R W
Sbjct: 376 SNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFW 425
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 372 KISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGN 551
+++ N + H G + MW K T + H GPV +AF +A+ G +
Sbjct: 246 EVNPYNSVVGLGHSGGTVTMW-KPTSQAPLVQMQCHPGPVSSVAFHPNGHLMATSGKERK 304
Query: 552 VRLWDV 569
+++WD+
Sbjct: 305 IKIWDL 310
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDE 521
+A D I + + ++++ LIK+WD E G H V+++ F+ D
Sbjct: 96 EAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDT 155
Query: 522 N-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
N AS D +++W++G +L + + ++Y K + +DD
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDD 208
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPD 641
+ +G D ++WD +C +L G S + +HP+
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPE 240
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
++T K+WD +T ++ H V ++F I +G DG VR+W
Sbjct: 202 LITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVSFHPELPIIITGSEDGTVRIWHATT 260
Query: 576 NTCTSSLR-GAMGVFSVLEYHPDSSKQLVFG 665
++L G V+++ H S+++V G
Sbjct: 261 YRLENTLNYGLERVWAI--GHIKGSRRVVIG 289
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Frame = +3
Query: 372 KISHSNQSIVTAHKSGLIKMWDKETG-----VQLKIWRS--SHKGPVVKLAFDSTDENIA 530
+ S Q + ++ G I++WD +G +Q + S H PV+ + F E +A
Sbjct: 220 RFSPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLA 279
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRG-AMGVFSVLEYHPDSSKQL 656
SG DG +++W + C + GV S L + D S+ L
Sbjct: 280 SGSQDGKIKIWRIRTGVCIRRFDAHSQGVTS-LSFSRDGSQLL 321
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/100 (20%), Positives = 39/100 (39%)
Frame = +3
Query: 351 NDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIA 530
+D + S ++ + + + G IK+W TGV ++ + +H V L+F +
Sbjct: 263 DDPVLCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRF-DAHSQGVTSLSFSRDGSQLL 321
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSK 650
S D R+ + RG + + D S+
Sbjct: 322 STSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSR 361
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S +++ + H +K+ D ETG LKI + P V E +ASG D VR
Sbjct: 112 SSDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVR 171
Query: 558 LWDVGHNTC 584
LW+ C
Sbjct: 172 LWNAKTGEC 180
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S +++ + H +K+ D ETG LKI + P V E +ASG D VR
Sbjct: 112 SSDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVR 171
Query: 558 LWDVGHNTC 584
LW+ C
Sbjct: 172 LWNAKTGEC 180
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 38.7 bits (86), Expect = 0.003
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Frame = +3
Query: 273 DEAIKVVEV--DTLITSLIIGE--TEEDAENDQIYTFKISHSNQS---IVTAHKSGLIKM 431
DE + V V D ++ +L G TE N Q+ + +S S +VTA G + +
Sbjct: 147 DEHLASVSVGGDLIVHNLASGARATELKDPNGQVLRL-LDYSRSSRHLLVTAGDDGTVHL 205
Query: 432 WDKETGVQLKI-WRSSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVGHNTCTSSL 596
WD TG K+ W H P + F ++E IAS G D + +D G +S +
Sbjct: 206 WD-TTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIASVGMDKKLYTYDSGSRRSSSCI 261
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 525 IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYH 635
I SGG+ V++WD+ C L+G + + Y+
Sbjct: 108 ICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYN 144
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSS 647
H VV L + D +ASG D V +W++ CT+ LRG + + + + P S
Sbjct: 117 HTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGS 173
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +3
Query: 420 LIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLR 599
L ++WD T + I++ H V+ + F ++ASGG D R+WD+ +
Sbjct: 153 LARVWDLRTARNILIFQG-HIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYIIP 211
Query: 600 GAMGVFSVLEYHPDSSKQLVFGAAD 674
+ + S ++Y P L + D
Sbjct: 212 AHVNLVSQVKYEPQERYFLATASHD 236
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 375 ISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDST-DENIASGGSDGN 551
+S + +VT SG+ K+W+ + HK V + F S DE +A+ +D
Sbjct: 71 LSRDGKILVTCSLSGVPKLWEVPQVTNKIVVLKGHKEHVTDVVFSSVDDECLATASTDRT 130
Query: 552 VRLW 563
++W
Sbjct: 131 EKIW 134
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
S +++ + H +K+ D ETG LK+ + P V E +ASG D VR
Sbjct: 115 STDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEVR 174
Query: 558 LWDVGHNTCTSS 593
LW+ + C S
Sbjct: 175 LWNTTTSECIRS 186
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +3
Query: 330 ETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKET-GVQLKIWRSSHKGPVVKLAF 506
+T + I + S S + T+ +++WD + G L+ + H V L F
Sbjct: 686 KTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYSLRTFMG-HSSMVTSLDF 744
Query: 507 DST-DENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
D+ I S +D +R W + + +CT +G + + + P K L +A+
Sbjct: 745 HPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGS---TQIRFQPRVGKYLAASSAN 798
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/109 (18%), Positives = 47/109 (43%)
Frame = +3
Query: 237 WTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKS 416
W G + + ++ +KV + T + E + Q F ++ + ++ ++S
Sbjct: 826 WDPSGDFLASVSEDMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQS 885
Query: 417 GLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
+++W+ + + +H+G + LA + +AS D V+LW
Sbjct: 886 --LELWNMSENKTMTL--PAHEGLITSLAVSTATGLVASASHDKLVKLW 930
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 390 QSIVTAHKSGLIKMWDKETGVQLKIWRSS--HKGPVVKLAFDSTD-ENIASGGSDGNVRL 560
Q ++TA K +++W+ ETG+ + I+ + H+ V+ + F +D AS G D +++
Sbjct: 142 QLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMDTTIKI 201
Query: 561 WDV 569
W +
Sbjct: 202 WSM 204
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/127 (18%), Positives = 57/127 (44%)
Frame = +3
Query: 231 IQWTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAH 410
++ T + +++ C+ I++ ++ + + + +N F+ ++ + +
Sbjct: 46 LELTPEKGKLVAACNPHIRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQ--YTGHMMYSGS 103
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
+ G +K+WD + +RS PV + + SG +GN+R+WD+ + C+
Sbjct: 104 EDGSVKIWDLRVRECQREFRSV--SPVNTVVLHPNQTELISGDQNGNIRVWDLRADLCSC 161
Query: 591 SLRGAMG 611
L +G
Sbjct: 162 ELVPEVG 168
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQ 653
SH V+ + F T + SG DG+V++WD+ C R V +V+ HP+ + +
Sbjct: 82 SHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQREFRSVSPVNTVV-LHPNQT-E 139
Query: 654 LVFG 665
L+ G
Sbjct: 140 LISG 143
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 37.5 bits (83), Expect = 0.008
Identities = 28/101 (27%), Positives = 43/101 (42%)
Frame = +3
Query: 375 ISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNV 554
IS IV+ + +WDK+T QL H V + S E + + DG V
Sbjct: 905 ISSDRGKIVSGSDDLSVIVWDKQT-TQLLEELKGHDSQVSCVKMLS-GERVLTAAHDGTV 962
Query: 555 RLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
++WDV + C +++ LEY D S ++ A D
Sbjct: 963 KMWDVRTDMCVATVGRCSSAILSLEY--DDSTGILAAAGRD 1001
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/105 (21%), Positives = 46/105 (43%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGG 539
I + + S + A + + +WD +G Q+ + K ++ + ++ + +G
Sbjct: 983 ILSLEYDDSTGILAAAGRDTVANIWDIRSGKQMHKLKGHTKW--IR-SIRMVEDTLITGS 1039
Query: 540 SDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
D R+W V +C + L G +EY P K ++ G+AD
Sbjct: 1040 DDWTARVWSVSRGSCDAVLACHAGPVQSVEYSP-FDKGIITGSAD 1083
Score = 33.9 bits (74), Expect = 0.099
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +3
Query: 393 SIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW--D 566
+++T ++W G + H GPV + + D+ I +G +DG +R W D
Sbjct: 1034 TLITGSDDWTARVWSVSRG-SCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWEND 1092
Query: 567 VGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
G C ++ + S+L + L GAAD+
Sbjct: 1093 EGGIKCVKNI--TLHSSSILSINA-GENWLGIGAADN 1126
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 420 LIKMWDKET-GVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSL 596
L+K+WD G +L+ H G V A S I SG D +V +WD L
Sbjct: 878 LVKIWDPSLRGSELRATLKGHTGTV--RAISSDRGKIVSGSDDLSVIVWDKQTTQLLEEL 935
Query: 597 RG 602
+G
Sbjct: 936 KG 937
Score = 27.5 bits (58), Expect = 8.6
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +3
Query: 192 KSAEFTAFYTGGDIQWTNDGLQMLCLCDEA-IKVVEVDTLITSLIIGETEEDAENDQIYT 368
+S E++ F G I + DGL DE IK V+ TL +S I+ EN
Sbjct: 1066 QSVEYSPF-DKGIITGSADGLLRFWENDEGGIKCVKNITLHSSSILSINA--GEN----W 1118
Query: 369 FKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDG 548
I ++ S+ H+ K +G QL V +A D + I SGG +G
Sbjct: 1119 LGIGAADNSMSLFHRPS--NAGTKVSGWQLYRVPQRTAAVVRCVASDLERKRICSGGRNG 1176
Query: 549 NVRLWDVGHN 578
+RLWD N
Sbjct: 1177 VLRLWDATIN 1186
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +3
Query: 393 SIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
+IV+A +K+W+ + +L+ + H G V +A ASGG DG V LWD+
Sbjct: 166 TIVSASWDKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 224
Query: 573 HNTCTSSLRGAMGVFSVLEYHPD 641
SL A V L + P+
Sbjct: 225 EGKKLYSLE-ANSVIHALCFSPN 246
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDK--ETGVQLKIWRSSHKGPV--VKLAFDSTDENI 527
+ + S N+ IV+A + IK+W+ E + H+ V V+ + ++ I
Sbjct: 108 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 167
Query: 528 ASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSS 647
S D V++W++ + S+L G G S + PD S
Sbjct: 168 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 207
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +3
Query: 396 IVTAHKSGLIKMW-----DKETGV-QLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
IV+A + I +W DK GV Q ++ SH V L+ D + SG DG +R
Sbjct: 31 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDGELR 88
Query: 558 LWDVGHNTCTSSLRG 602
LWD+ T G
Sbjct: 89 LWDLAAGVSTRRFVG 103
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 36.7 bits (81), Expect = 0.014
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSK 650
SHK V +AF+ D+N SG DG VR+WDV + + L Y PD
Sbjct: 402 SHKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVV-DYTDIRQIVTALCYRPDGKG 460
Query: 651 QLV 659
+V
Sbjct: 461 AVV 463
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
S+H G +V + F + +AS G D VR+W++
Sbjct: 254 SAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNI 286
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIA 530
D Y + + +++ + +WD TG ++ KGPV + + ++A
Sbjct: 139 DDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVA 198
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRG 602
G ++ V+LWD N +L+G
Sbjct: 199 VGLNNSEVQLWDSASNRQLRTLKG 222
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Frame = +3
Query: 339 EDAENDQIYTFKISH---------SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPV 491
+ A N Q+ T K H +N + T GLI D + H V
Sbjct: 210 DSASNRQLRTLKGGHQSRVGSLAWNNHILTTGGMDGLIINNDVRIRSPIVETYRGHTQEV 269
Query: 492 VKLAFDSTDENIASGGSDGNVRLWD 566
L + + + +ASGG+D V +WD
Sbjct: 270 CGLKWSGSGQQLASGGNDNVVHIWD 294
Score = 30.7 bits (66), Expect = 0.93
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Frame = +3
Query: 288 VVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKI- 464
++ D I S I+ ET ++ K S S Q + + ++ +WD+
Sbjct: 247 IINNDVRIRSPIV-ETYR-GHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTT 304
Query: 465 -WR---SSHKGPVVKLAFDSTDENIAS---GGSDGNVRLWDVGHNTCTSSLRGAMGVFSV 623
W H V LA+ N+ + GG D ++ W+ C +S+ V S+
Sbjct: 305 QWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSL 364
Query: 624 L 626
L
Sbjct: 365 L 365
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIA 530
D Y + + +++ + +WD TG ++ KGPV + + ++A
Sbjct: 129 DDFYLNLLDWGSANVLAIALDHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVA 188
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRG 602
G ++ V+LWD N +L+G
Sbjct: 189 VGLNNSEVQLWDSASNRQLRTLKG 212
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Frame = +3
Query: 339 EDAENDQIYTFKISH---------SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPV 491
+ A N Q+ T K H +N + T GLI D + H V
Sbjct: 200 DSASNRQLRTLKGGHQSRVGSLAWNNHILTTGGMDGLIINNDVRIRSPIVETYRGHTQEV 259
Query: 492 VKLAFDSTDENIASGGSDGNVRLWD 566
L + + + +ASGG+D V +WD
Sbjct: 260 CGLKWSGSGQQLASGGNDNVVHIWD 284
Score = 30.7 bits (66), Expect = 0.93
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Frame = +3
Query: 288 VVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKI- 464
++ D I S I+ ET ++ K S S Q + + ++ +WD+
Sbjct: 237 IINNDVRIRSPIV-ETYR-GHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTT 294
Query: 465 -WR---SSHKGPVVKLAFDSTDENIAS---GGSDGNVRLWDVGHNTCTSSLRGAMGVFSV 623
W H V LA+ N+ + GG D ++ W+ C +S+ V S+
Sbjct: 295 QWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSL 354
Query: 624 L 626
L
Sbjct: 355 L 355
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/122 (20%), Positives = 55/122 (45%)
Frame = +3
Query: 231 IQWTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAH 410
++ T D + C+ I++ +V++ ++ D+ + + + + +
Sbjct: 41 LEITPDKHYLAAACNPHIRLFDVNSNSPQPVM---TYDSHTNNVMAVGFQCDAKWMYSGS 97
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
+ G +K+WD K + S V L + T+ + SG +GN+R+WD+ N+C+
Sbjct: 98 EDGTVKIWDLRAPGCQKEYESVAAVNTVVLHPNQTE--LISGDQNGNIRVWDLRANSCSC 155
Query: 591 SL 596
L
Sbjct: 156 EL 157
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQ 653
SH V+ + F + + SG DG V++WD+ C V +V+ HP+ + +
Sbjct: 76 SHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVV-LHPNQT-E 133
Query: 654 LVFG 665
L+ G
Sbjct: 134 LISG 137
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +3
Query: 396 IVTAHKSGLIKMW----DKETGVQLKIWRS--SHKGPVVKLAFDSTDENIASGGSDGNVR 557
+V A+ G +W K+T + + +H G ++K ++ +A+ SD V+
Sbjct: 177 VVAANNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKYLATASSDKTVK 236
Query: 558 LWDV 569
+W+V
Sbjct: 237 IWNV 240
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
S + V + ++++D TG ++ H GPV + F T + ASG DG +R+W
Sbjct: 239 SGEKFVAGGEDMWVRVFDFYTGEEIGC-NKGHHGPVHCVRFTPTGLSYASGSEDGTIRIW 297
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
+++A K + + ETG + + HKG V D+ AS +D + +LWD
Sbjct: 34 LISASKDSHPMLRNGETGDWIGTFEG-HKGAVWSSCLDNNALRAASASADFSAKLWD 89
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
S + V + ++++D TG ++ H GPV + F T + ASG DG +R+W
Sbjct: 239 SGEKFVAGGEDMWVRVFDFYTGEEIGC-NKGHHGPVHCVRFTPTGLSYASGSEDGTIRIW 297
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
+++A K + + ETG + + HKG V D+ AS +D + +LWD
Sbjct: 34 LISASKDSHPMLRNGETGDWIGTFEG-HKGAVWSSCLDNNALRAASASADFSAKLWD 89
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 36.3 bits (80), Expect = 0.019
Identities = 22/76 (28%), Positives = 39/76 (51%)
Frame = +3
Query: 351 NDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIA 530
N + K S S+++ +++D E GV+ + ++ VVK D+ + +
Sbjct: 205 NAPVKDVKWSKQGLSLLSCGYDCTSRLFDVERGVETQSFKEDEVVGVVKFHPDNCNVFL- 263
Query: 531 SGGSDGNVRLWDVGHN 578
SGGS G++RLWD+ N
Sbjct: 264 SGGSKGSLRLWDIRAN 279
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 492 VKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
+K F E +ASG SDG+V ++D L+ + YHP
Sbjct: 390 IKCNFSPDGETLASGSSDGSVYMYDYKSTALIKKLKAYEQPCVNVSYHP 438
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDV 569
S HKGPV L F++ N +ASG DG + +WD+
Sbjct: 119 SVHKGPVRGLEFNAISSNLLASGADDGEICIWDL 152
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDV 569
S HKGPV L F++ N +ASG DG + +WD+
Sbjct: 119 SVHKGPVRGLEFNAISSNLLASGADDGEICIWDL 152
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = +3
Query: 357 QIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASG 536
+I + + S+ TA WD E+G ++K+ H + + S+ I +G
Sbjct: 161 EINAMSVDPQSGSVFTAAGDSCAYCWDVESG-KIKMTFKGHSDYLHTVVSRSSASQILTG 219
Query: 537 GSDGNVRLWDVGHNTC 584
DG R+WD C
Sbjct: 220 SEDGTARIWDCKTGKC 235
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +3
Query: 351 NDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGP---VVKLAFDSTDE 521
+D ++T S I+T + G ++WD +TG +K+ S K V +A D ++
Sbjct: 201 SDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIGSQDKKSRLRVSSMALDGSES 260
Query: 522 NIASGGSDGNVRLWDVGHNTCTSSL 596
+ G N+ LW++ + C ++
Sbjct: 261 WLVC-GQGKNLALWNLPASECVQTI 284
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 381 HSNQSIVTAHKS-GLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN--IASGGSDGN 551
HS S+V+ S G K D ++ R+ H+GP + F DE+ + S G DG
Sbjct: 57 HSLNSLVSQSASFGYSKGQDVMVAEPERVVRA-HEGPAYDVKFYGEDEDALLLSCGDDGR 115
Query: 552 VRLW 563
VR W
Sbjct: 116 VRGW 119
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVGH 575
S HKGPV L F+ N +ASG DG V +WD+ +
Sbjct: 112 SKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDLAN 147
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIA 530
D Y + + +++ + +WD +G K+ +GPV + + ++A
Sbjct: 91 DDFYLNLLDWGSSNVLAIALGDTVYLWDASSGSTYKLVTIDEEEGPVTSINWTQDGLDLA 150
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRG 602
G + V+LWD N +LRG
Sbjct: 151 IGLDNSEVQLWDCVSNRQVRTLRG 174
Score = 31.5 bits (68), Expect = 0.53
Identities = 28/121 (23%), Positives = 51/121 (42%)
Frame = +3
Query: 231 IQWTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAH 410
I WT DGL + D + V++ +++ + T ++ + ++ +N + T
Sbjct: 140 INWTQDGLDLAIGLDNS--EVQLWDCVSNRQV-RTLRGGHESRVGS--LAWNNHILTTGG 194
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
G I D + H V L + + + +ASGG+D V +WD H + S
Sbjct: 195 MDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWD--HRSVAS 252
Query: 591 S 593
S
Sbjct: 253 S 253
Score = 31.1 bits (67), Expect = 0.70
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Frame = +3
Query: 285 KVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKI 464
K+V D I S I+ ET +++ K S S + + + ++ +WD +
Sbjct: 198 KIVNNDVRIRSSIV-ETYL-GHTEEVCGLKWSESGKKLASGGNDNVVHIWDHRSVASSNP 255
Query: 465 WRS------SHKGPVVKLAFDSTDENI-ASGGS--DGNVRLWDVGHNTCTSSLRGAMGVF 617
R H V LA+ ++ A+GG DG ++ W+ C +S+ V
Sbjct: 256 TRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVC 315
Query: 618 SVL 626
S+L
Sbjct: 316 SLL 318
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSS 647
+ HKG + LA TD +A+GG D LW +G+ + L G S L + D
Sbjct: 67 TGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYD-G 125
Query: 648 KQLVFGAAD 674
+ L G D
Sbjct: 126 QLLASGGLD 134
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
HK V LAF + +ASGG DG V+++D T L G + +HP
Sbjct: 112 HKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRWHP 165
Score = 29.1 bits (62), Expect = 2.8
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +3
Query: 381 HSNQSI-VTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENI---ASGGSDG 548
+SN S+ ++ K G + + + TG + +SH V + F + I A+GG D
Sbjct: 251 NSNSSLAISGSKDGSVHIVNIVTGKVVSSL-NSHTDSVECVKFSPSSATIPLAATGGMDK 309
Query: 549 NVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
+ +WD+ H+T GV S+ +SK L G A+
Sbjct: 310 KLIIWDLQHSTPRFICEHEEGVTSLTWI--GTSKYLATGCAN 349
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H G V+ +++ S D + S D VRLW VG N C V SV +++P +
Sbjct: 327 HTGEVLDISW-SKDNYLLSASMDKTVRLWKVGSNDCLGVFAHNSYVTSV-QFNPVNENYF 384
Query: 657 VFGAAD 674
+ G+ D
Sbjct: 385 MSGSID 390
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+H G ++ + F + + +AS G DG VR+W V
Sbjct: 219 AHDGAILAMKFSNDGKFLASSGEDGIVRVWKV 250
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVG 572
+++A +++W + L ++ +H V + F+ +EN SG DG VR+W++
Sbjct: 342 LLSASMDKTVRLWKVGSNDCLGVF--AHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNIS 399
Query: 573 HNTCTSSLRGAMGVFSVLEYHPDSSKQLV 659
+ S + Y PD ++
Sbjct: 400 -GCSVVDWADLKDIISAVCYRPDGQGGII 427
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN-IASGGSDGNVRLW 563
N +++A +++W + G + + SH V + F+ D++ SG DG VR+W
Sbjct: 367 NNRLLSASVDNSVRLW--QIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIW 424
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLV 659
A G+ + + Y PD ++
Sbjct: 425 SASQCQVV-DWADARGIVTAVCYQPDGQAVII 455
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H G ++ +++ S + + S D +VRLW +G C V SV +++P
Sbjct: 355 HSGDILDISW-SKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSV-QFNPVDDDHF 412
Query: 657 VFGAAD 674
+ G+ D
Sbjct: 413 ISGSID 418
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+H+G ++ + F +AS G DG +R+W V
Sbjct: 249 AHEGAILAMKFSPDGRYLASAGEDGVLRVWSV 280
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN-IASGGSDGNVRLW 563
N +++A +++W + G + + SH V + F+ D++ SG DG VR+W
Sbjct: 367 NNRLLSASVDNSVRLW--QIGCEDCLGIFSHNNYVTSVQFNPVDDDHFISGSIDGKVRIW 424
Query: 564 DVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLV 659
A G+ + + Y PD ++
Sbjct: 425 SASQCQVV-DWADARGIVTAVCYQPDGQAVII 455
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H G ++ +++ S + + S D +VRLW +G C V SV +++P
Sbjct: 355 HSGDILDISW-SKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSV-QFNPVDDDHF 412
Query: 657 VFGAAD 674
+ G+ D
Sbjct: 413 ISGSID 418
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+H+G ++ + F +AS G DG +R+W V
Sbjct: 249 AHEGAILAMKFSPDGRYLASAGEDGVLRVWSV 280
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSL 596
HK VV L +++ SG D +VRLWD+ N C L
Sbjct: 113 HKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGIL 152
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 312 TSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQ-LKIWRSSHKGP 488
T L+ G+T E ND K S+ +S++ + I + D G + +G
Sbjct: 193 TFLVGGDTAE--VND----IKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEPSQGT 246
Query: 489 VVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
++ F + + SG DG + W++ + + + +GV S L++ P
Sbjct: 247 PIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVSCLKWAP 296
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+ + G I++W+ + +W HK V + T E + SG +D +R+W +
Sbjct: 866 LFSGFSDGSIRVWNVNKKIATLLWDIKEHKSTVTCFSLSETGECVLSGSADKTIRVWQI 924
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Frame = +3
Query: 333 TEEDAENDQIYTFKISHSN--QSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAF 506
+E D + + + S + +IV+A +K+W+ + +L+ + H G + +A
Sbjct: 143 SEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQN-CKLRNTLAGHSGYLNTVAV 201
Query: 507 DSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSV 623
ASGG DG + LWD+ SL + S+
Sbjct: 202 SPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSL 240
Score = 33.9 bits (74), Expect = 0.099
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +3
Query: 360 IYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSS-HKGPV--VKLAFDSTDENIA 530
+ + S N+ IV+A + IK+W+ + I + HK V V+ + ++ I
Sbjct: 108 VLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEADGHKEWVSCVRFSPNTLVPTIV 167
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSS 647
S D V++W++ + ++L G G + + PD S
Sbjct: 168 SASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGS 206
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Frame = +3
Query: 396 IVTAHKSGLIKMW-----DKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
IVT+ + I +W DK GV + + H V + S + SG DG +RL
Sbjct: 31 IVTSSRDKSIILWKLTKEDKSYGVAQRRM-TGHSHFVQDVVLSSDGQFALSGSWDGELRL 89
Query: 561 WDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
WD+ T G + + D ++Q+V + D
Sbjct: 90 WDLATGESTRRFVGHTKDVLSVAFSTD-NRQIVSASRD 126
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 345 AENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQ---LKIWRSSHKGPVVKLAFDST 515
A +D + +S +N ++ T I++W K TG + L HK V LA +
Sbjct: 233 AHDDAVNAIAVS-TNGTVYTGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDD 291
Query: 516 DENIASGGSDGNVRLWDVGHNTCTSSLRGAM 608
+ SG D ++ +W+ + ++RGA+
Sbjct: 292 GSVLFSGSCDRSILVWEREDTSNYMAVRGAL 322
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 35.5 bits (78), Expect = 0.033
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 381 HSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
H N + + + + +D +TG ++ H GPV + + E+ SG DG VR+
Sbjct: 234 HGN-TFIAGGEDMWVHRFDFQTGEEIGC-NKGHHGPVHCVRYAPGGESYTSGSEDGTVRI 291
Query: 561 WDVG 572
W VG
Sbjct: 292 WVVG 295
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETG---VQLKIWRSSHKGPVVKLAFDS 512
DA + I + + +++A +KMW +T +L +RS H P + + F S
Sbjct: 265 DAHDSSIISLNFLANEPVLMSASADNSLKMWIFDTNDGDPRLLRFRSGHSAPPLCIRFYS 324
Query: 513 TDENIASGGSDGNVRLWDV 569
+I S G D RL+ V
Sbjct: 325 NGRHILSAGQDRAFRLFSV 343
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 468 RSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
R +H G V+ +A DST+ + S G G++++WD
Sbjct: 470 RYAHDGEVIGVACDSTNTLMISAGYHGDLKVWD 502
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +3
Query: 387 NQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
N + T +I+++D T ++ +R H + L F + + S DG++R+WD
Sbjct: 527 NGLLATVADDFVIRLYDVVTLKMVREFRG-HTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
Query: 567 V 569
V
Sbjct: 586 V 586
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 417 GLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN--IASGGSDGNVRLWDVGHNTCTS 590
G I + + + ++ + + +G V L+F STD +ASGGS G + +W++ S
Sbjct: 203 GKIHVHNIKLDEEIVTFEHASRGAVTALSF-STDGRPLLASGGSFGVISIWNLNKKRLQS 261
Query: 591 SLRGA 605
+R A
Sbjct: 262 VIRDA 266
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 35.1 bits (77), Expect = 0.043
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +3
Query: 348 ENDQIYTFKISHSNQSIVTAHKSGLIKMW----DKETGV-QLKIWRS--SHKGPVVKLAF 506
E +QI +SH + +VT + GL+ +W D G +L++ +S +H V+ L
Sbjct: 3273 EGNQIQCAGVSHDGRIVVTGAEDGLVSVWRVSKDGPRGSRRLRLEKSLCAHTAKVICLRV 3332
Query: 507 DSTDENIASGGSDGNVRLWDV 569
IAS D V +WD+
Sbjct: 3333 SQPYMMIASSSDDCTVIIWDL 3353
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSK 650
+ H V F S ++ IAS D +R+W++ C + G + + +HP ++
Sbjct: 213 TGHSKDVTDFDFSSNNQYIASSSLDKTIRVWELSRGVCIRVIYGISPQYCI-RFHPVNNN 271
Query: 651 QLVFGAAD 674
L G A+
Sbjct: 272 FLSAGNAN 279
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+ +WD + L I +H+G LA T + + +GG DG ++++++
Sbjct: 317 VYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEI 365
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWD-----KETGVQLKIWRSSHKGPVVKLAF 506
DA Y+ SH+ + T + G IKM++ ET V L H PV L+F
Sbjct: 333 DAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSF 392
Query: 507 DSTDENIASGGSDGNVRLWDV 569
+ + S DG + L DV
Sbjct: 393 EF--PWLVSASGDGKLALIDV 411
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
++ ++ G I +WD H PV+ L+ S+ + SGG+D + ++++ H
Sbjct: 234 VLAGYEDGSILLWDIRNAKIPLTSVKFHSEPVLSLSVASSCDGGISGGADDKIVMYNLNH 293
Query: 576 NTCTSSLR 599
+T + ++R
Sbjct: 294 STGSCTIR 301
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 381 HSNQSIV-TAHKSGLIKMWDK-ETGVQLKIWRSSHKGPVVKLAFDST--DENIASGGSDG 548
H ++S++ T G +++WD + W S V+ +A ++ I S G DG
Sbjct: 26 HPSKSLLFTGSADGELRIWDTIQHRAVSSAWAHSRANGVLAVAASPWLGEDKIISQGRDG 85
Query: 549 NVRLWDV 569
V+ WD+
Sbjct: 86 TVKCWDI 92
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSS 593
H+ V+ ++F + + +G +DG +R+WD + SS
Sbjct: 16 HRHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSS 54
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 34.3 bits (75), Expect = 0.075
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Frame = +3
Query: 285 KVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQ--L 458
K+V D I S IIG E ++ K S S + + + ++ +WD+
Sbjct: 216 KIVNNDVRIRSSIIGTYVGHTE--EVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPT 273
Query: 459 KIWR---SSHKGPVVKLAFDSTDENI-ASGGS--DGNVRLWDVGHNTCTSSLRGAMGVFS 620
+ W H V LA+ ++ A+GG DG + W+ C +S+ V S
Sbjct: 274 RQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCS 333
Query: 621 VL 626
+L
Sbjct: 334 LL 335
Score = 30.7 bits (66), Expect = 0.93
Identities = 26/112 (23%), Positives = 47/112 (41%)
Frame = +3
Query: 231 IQWTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAH 410
I WT DGL + D + V+V +++ + T ++ + ++ +N + T
Sbjct: 158 INWTQDGLDLAVGLDNS--EVQVWDCVSNRHV-RTLRGGHESRVGS--LAWNNHILTTGG 212
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
G I D + H V L + + + +ASGG+D V +WD
Sbjct: 213 MDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
IV + +WD + K+ GPV + + ++A G + V++WD
Sbjct: 123 IVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCV 182
Query: 573 HNTCTSSLRG 602
N +LRG
Sbjct: 183 SNRHVRTLRG 192
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 34.3 bits (75), Expect = 0.075
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +3
Query: 348 ENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENI 527
E + F++S + +I G I + +T + + + G V LAF +++
Sbjct: 332 EEKSLEYFEVSQDSNTIAFVGNEGYILLVSTKTKELIGTLKMN--GSVRSLAFSEDGKHL 389
Query: 528 ASGGSDGNVRLWDVGHNTC 584
S G DG V +WD+ C
Sbjct: 390 LSSGGDGQVYVWDLRTMKC 408
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 34.3 bits (75), Expect = 0.075
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +3
Query: 318 LIIGETEED--AENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSS-HKGP 488
L GET + + S N+ IV+A + IK+W+ + I HK
Sbjct: 92 LATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEW 151
Query: 489 V--VKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSS 647
V V+ + ++ I S D V++W++ + +SL G G + + PD S
Sbjct: 152 VSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGS 206
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 393 SIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
+IV+A +K+W+ + +L+ H G + +A ASGG DG + LWD+
Sbjct: 165 TIVSASWDKTVKVWNLQN-CKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLA 223
Query: 573 HNTCTSSLRGAMGVFSV 623
SL + S+
Sbjct: 224 EGKKLYSLEAGSIIHSL 240
Score = 30.7 bits (66), Expect = 0.93
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +3
Query: 396 IVTAHKSGLIKMW-----DKETGV-QLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
IVTA + I +W DK GV Q ++ SH V L+ D + SG DG +R
Sbjct: 31 IVTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDGELR 88
Query: 558 LWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
LWD+ T G + + D ++Q+V + D
Sbjct: 89 LWDLATGETTRRFVGHTKDVLSVAFSTD-NRQIVSASRD 126
>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to nuclear pore protein SEH1 (SP:P53011)
[Saccharomyces cerevisiae]
Length = 326
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHN 578
S H+G V ++ +D + +AS GSDG V+LW N
Sbjct: 277 SGHQGEVWQMEWDMSGMTLASTGSDGMVKLWQSNLN 312
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 34.3 bits (75), Expect = 0.075
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = +3
Query: 348 ENDQIYTFKISHSNQSIVTAHKSGLIKMW----DKETG---VQLKIWRSSHKGPVVKLAF 506
E++QI +SH + +VT + GL+ +W D G ++L+ +H V L
Sbjct: 3329 ESNQIQCAGVSHDGRIVVTGAEDGLVCVWRVSKDGPRGSRRLRLEKALCAHTAKVTCLRV 3388
Query: 507 DSTDENIASGGSDGNVRLWDV 569
IASG D V +WD+
Sbjct: 3389 SQPYMMIASGSDDCTVIIWDL 3409
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 33.9 bits (74), Expect = 0.099
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Frame = +3
Query: 285 KVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKI 464
K+V D I S I+G E ++ K S S + + + ++ +WD + K
Sbjct: 229 KIVNNDVRIRSSIVGTYLGHTE--EVCGLKWSESGKKLASGGNYNVVHIWDHRSVASSKP 286
Query: 465 WRS------SHKGPVVKLA---FDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVF 617
R H V LA F +T G DG ++ W+ C +S+ V
Sbjct: 287 TRQWLHRFEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVC 346
Query: 618 SVL 626
S+L
Sbjct: 347 SLL 349
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIA 530
D Y + + +++ + +WD +G ++ KGPV + + ++A
Sbjct: 122 DDFYLNLLDWGSANVLAIALGDTVYLWDASSGSTSELVTIDEDKGPVTSINWTQDGLDLA 181
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRG 602
G + V+LWD N +L G
Sbjct: 182 VGLDNSEVQLWDFVSNRQVRTLIG 205
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.9 bits (74), Expect = 0.099
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 273 DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQS-IVTAHKSGLIKMWDKETG 449
D+ + +V T + + + G + + + IS SN + ++ ++WD
Sbjct: 178 DQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAA 237
Query: 450 VQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV--GH 575
+ H+G V + F +G DG RL+D+ GH
Sbjct: 238 SRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 281
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 33.9 bits (74), Expect = 0.099
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 273 DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQS-IVTAHKSGLIKMWDKETG 449
D+ + +V T + + + G + + + IS SN + ++ ++WD
Sbjct: 116 DQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAA 175
Query: 450 VQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV--GH 575
+ H+G V + F +G DG RL+D+ GH
Sbjct: 176 SRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 219
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSG-LIKMWDKETG---VQLKIWRSSHKGPVVKLAFD 509
D EN + + S S + + + S +WD G + L + + SH+ + L
Sbjct: 229 DGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLS 288
Query: 510 STDENIASGGSDGNVRLWDVG 572
+ + +G D N+++W G
Sbjct: 289 ADGSALCTGSWDSNLKIWAFG 309
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.9 bits (74), Expect = 0.099
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 273 DEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQS-IVTAHKSGLIKMWDKETG 449
D+ + +V T + + + G + + + IS SN + ++ ++WD
Sbjct: 178 DQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTARLWDTRAA 237
Query: 450 VQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV--GH 575
+ H+G V + F +G DG RL+D+ GH
Sbjct: 238 SRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGH 281
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSG-LIKMWDKETG---VQLKIWRSSHKGPVVKLAFD 509
D EN + + S S + + + S +WD G + L + + SH+ + L
Sbjct: 291 DGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLS 350
Query: 510 STDENIASGGSDGNVRLWDVG 572
+ + +G D N+++W G
Sbjct: 351 ADGSALCTGSWDSNLKIWAFG 371
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 33.9 bits (74), Expect = 0.099
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Frame = +3
Query: 342 DAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKET-GVQLKIWR----SSHKGPVVKLAF 506
+A +D + T +S + + T G +K+W +E G ++K + V LA
Sbjct: 284 EAHDDAVNTV-VSGFDDLVFTGSADGTLKVWKREVQGKEMKHVLVQVLMKQENAVTALAV 342
Query: 507 DSTDENIASGGSDGNVRLWD 566
+ TD + G SDG V W+
Sbjct: 343 NLTDAVVYCGSSDGTVNFWE 362
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/76 (25%), Positives = 29/76 (38%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
K + W K L H+ V +A S + + +G D +R+WD CT
Sbjct: 128 KCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWDCASGQCTG 187
Query: 591 SLRGAMGVFSVLEYHP 638
L+ + VL P
Sbjct: 188 VLKLGGEIGCVLSEGP 203
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 336 EEDAENDQIYTFKISHSNQS--IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFD 509
E DA + S NQ +VT + IK+WD TG +L + H+ PV +
Sbjct: 459 EIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTF-EGHEAPVYSVCPH 517
Query: 510 STD--ENIASGGSDGNVRLW 563
+ + I S DG ++ W
Sbjct: 518 QKENIQFIFSTAVDGKIKAW 537
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = +3
Query: 336 EEDAENDQIYTFKISHSNQS--IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFD 509
E DA + S NQ +VT + IK+WD TG +L + H+ PV +
Sbjct: 459 EIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTF-EGHEAPVYSVCPH 517
Query: 510 STD--ENIASGGSDGNVRLW 563
+ + I S DG ++ W
Sbjct: 518 QKENIQFIFSTAVDGKIKAW 537
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 384 SNQSIVTAHKSGLIKMWD-----KETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDG 548
+ ++++T+ + G +++WD +T V + PV A+D + IA G DG
Sbjct: 290 TKETVLTSSEDGSLRIWDVNNFLSQTQVIKPKLARPGRVPVTTCAWDRDGKRIAGGVGDG 349
Query: 549 NVRLWDV 569
++++W +
Sbjct: 350 SIQIWSL 356
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = +3
Query: 240 TNDGLQMLCL-CDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKS 416
TNDG+ +L D I++ ++++ +L+ ET N I V K+
Sbjct: 321 TNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPCMKT 380
Query: 417 -GLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
MW T + L+ H V F+S D+ + + GSD + +W G
Sbjct: 381 VKAFGMWSGRTTLMLR----GHYESVNTCCFNSNDQELYTSGSDRQILVWSPG 429
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV--GHNTCTSSLRGAMGVFSVLEYHPDS 644
++H G V L + + S GSD +RLWD+ G NT + G + ++
Sbjct: 309 TAHYGAVTGLKATNDGMYLLSAGSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSD 368
Query: 645 SKQLVF 662
LVF
Sbjct: 369 DPALVF 374
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIA-SGGSDGNVRLWDVGHNTC 584
S H+ V+ + + ++ E + +GG DG +R WD+ C
Sbjct: 187 SGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGC 225
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 33.1 bits (72), Expect = 0.17
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Frame = +3
Query: 285 KVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKE--TGVQL 458
K+V D I S I+ ET +++ K S S + ++ +WD+ + Q
Sbjct: 232 KIVNNDVRIRSSIV-ETYL-GHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQT 289
Query: 459 KIWR---SSHKGPVVKLAFDSTDENI-ASGGS--DGNVRLWDVGHNTCTSSLRGAMGVFS 620
+ W H V LA+ ++ A+GG DG ++ W+ C +S+ V S
Sbjct: 290 RQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCS 349
Query: 621 VL 626
+L
Sbjct: 350 LL 351
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWR-SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLR 599
+ +WD +G ++ KGPV + + ++A G + V+LWD N +LR
Sbjct: 148 VYLWDASSGSTSELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSNRQVRTLR 207
Query: 600 G 602
G
Sbjct: 208 G 208
Score = 27.5 bits (58), Expect = 8.6
Identities = 25/112 (22%), Positives = 44/112 (39%)
Frame = +3
Query: 231 IQWTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAH 410
I WT DGL + D + V++ +++ + T ++ + ++ N + T
Sbjct: 174 INWTQDGLDLAVGLDNS--EVQLWDCVSNRQV-RTLRGGHESRVGS--LAWDNHILTTGG 228
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
G I D + H V L + + ASGG+D V +WD
Sbjct: 229 MDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWD 280
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 357 QIYTFKISHSNQSIVTAH--KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIA 530
Q+ + S S + ++++H + +W K + + H V+ +A +A
Sbjct: 346 QVCSLLWSQSERELLSSHGFTQNQLTLW-KYPSMSKMAELNGHTSRVLFMAQSPNGCTVA 404
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDS 644
S D N+RLW+V ++ + A + L H +S
Sbjct: 405 SAAGDENLRLWNVFGEPPKTTKKAASKKYPELFSHVNS 442
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/62 (25%), Positives = 23/62 (37%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
K + W K L H+ V +A S + + + D VR+WD CT
Sbjct: 121 KCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCASGQCTG 180
Query: 591 SL 596
L
Sbjct: 181 VL 182
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 459 KIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYH 635
K SH V+ LA++ NI AS +D V++WDV TC ++ + ++
Sbjct: 258 KFKEGSHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWN 317
Query: 636 PDSSKQLVFGAAD 674
+ + L+ G+ D
Sbjct: 318 HYAPEVLLSGSFD 330
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +3
Query: 432 WDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMG 611
W++ G + ++ HK + + FD+T + G D +++ WD+ +++ G G
Sbjct: 581 WNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGG 640
Query: 612 V 614
+
Sbjct: 641 L 641
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 366 TFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLA--FDSTDENIASGG 539
+F + ++T IK+WD TGV+ + H+ PV + + + I S
Sbjct: 469 SFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTF-EGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 540 SDGNVRLW 563
DG ++ W
Sbjct: 528 LDGKIKAW 535
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +3
Query: 432 WDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMG 611
W++ G + ++ HK + + FD+T + G D +++ WD+ +++ G G
Sbjct: 581 WNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGG 640
Query: 612 V 614
+
Sbjct: 641 L 641
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 366 TFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLA--FDSTDENIASGG 539
+F + ++T IK+WD TGV+ + H+ PV + + + I S
Sbjct: 469 SFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTF-EGHEAPVYSVCPHYKENIQFIFSTA 527
Query: 540 SDGNVRLW 563
DG ++ W
Sbjct: 528 LDGKIKAW 535
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 468 RSSHKGPVVKLAFDSTDENI-ASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDS 644
+ SH V+ LA++ NI AS +D V++WDV TC ++ + ++ +
Sbjct: 229 QGSHTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYA 288
Query: 645 SKQLVFGAAD 674
+ L+ G+ D
Sbjct: 289 PEVLLSGSFD 298
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETG-VQLKIWRSSHKGPVVKLAFDSTDENIA 530
D + + +S+ + + + +K++ +G Q I R + P+ LAF+ + +A
Sbjct: 63 DGVTSLALSNDSTLLASGSIDHCVKLYKFPSGEFQTNITRFTL--PIRVLAFNGSGSLLA 120
Query: 531 SGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPD 641
+ G D ++L + + L+G G + L++HP+
Sbjct: 121 AAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPN 157
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
HKGPV L F E +AS + G V W++ + + +L+G
Sbjct: 145 HKGPVTGLDFHPNGELLASIDTTGTVLCWELQNGVVSFTLKG 186
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 32.7 bits (71), Expect = 0.23
Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Frame = +3
Query: 291 VEVDTLITSLIIGETE--EDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKI 464
V++ + +T GE + D N ++ + S + + G I+ WD + Q+
Sbjct: 65 VKLYSPVTGQYYGECKGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSR 124
Query: 465 WRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGA-MGVFSVLEYHPD 641
+ + + ++ +N+ +GG V LWD ++ + L + M + + + P+
Sbjct: 125 IDTGNDQEIFSFSYGGAADNLLAGGCKEQVLLWDWRNSKQVACLEESHMDDVTQVHFVPN 184
Query: 642 SSKQLVFGAAD 674
+L+ + D
Sbjct: 185 KPNKLLSASVD 195
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 432 WDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
W++ G + ++ HK + + FD+T + G D +++ WD+
Sbjct: 581 WNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 369 FKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLA--FDSTDENIASGGS 542
F + + T IK+WD TGV+ + H+ PV + + + I S
Sbjct: 470 FSTPNKQLCVTTCGDDKTIKVWDAATGVK-RYTFEGHEAPVYSICPHYKENIQFIFSTAL 528
Query: 543 DGNVRLW 563
DG ++ W
Sbjct: 529 DGKIKAW 535
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 432 WDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
W++ G + ++ HK + + FD+T + G D +++ WD+
Sbjct: 581 WNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDM 626
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 369 FKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLA--FDSTDENIASGGS 542
F + + T IK+WD TGV+ + H+ PV + + + I S
Sbjct: 470 FSTPNKQLCVTTCGDDKTIKVWDAATGVK-RYTFEGHEAPVYSICPHYKENIQFIFSTAL 528
Query: 543 DGNVRLW 563
DG ++ W
Sbjct: 529 DGKIKAW 535
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDV 569
+H V +AF+ D+N SG DG VR+WDV
Sbjct: 360 THNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
S+H G ++ + F + IAS G D VR+W +
Sbjct: 215 SAHDGSILAMKFSPDGKYIASAGEDCVVRVWSI 247
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDV 569
+H V +AF+ D+N SG DG VR+WDV
Sbjct: 360 THNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
S+H G ++ + F + IAS G D VR+W +
Sbjct: 215 SAHDGSILAMKFSPDGKYIASAGEDCVVRVWSI 247
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+ HKG + L F + +A+GG DG V++W +
Sbjct: 195 NGHKGKIWTLKFSPDGKYLATGGEDGVVKIWRI 227
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVG 572
+++A K +++W TG + H V + F+ ++N ASG DG R+W +
Sbjct: 286 LLSASKDKTVRLW--RTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWGLS 343
Query: 573 HNTCTSSLRGAMGVFSVLEYHPDSS 647
+ S + Y P+ +
Sbjct: 344 EERVV-AWTDVRDSISAISYQPNGN 367
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 32.3 bits (70), Expect = 0.30
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Frame = +3
Query: 330 ETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDK---ETGVQLKIWRS------SHK 482
E+ +A +D I +S N I T IK+W K E V+ K S H
Sbjct: 201 ESFTNAHDDAINAVALSE-NGDIYTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHN 259
Query: 483 GPVVKLAFDSTDENIA-SGGSDGNVRLW---DVGHNTCTSSLRG 602
+ LA T+ ++ SGGSDG++ +W D G LRG
Sbjct: 260 SGINALALSGTNGSLLHSGGSDGSILVWERDDGGDIVVVGMLRG 303
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 432 WDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH-NTCTSS-LRGA 605
W++ G + ++ K + FD++ + + G DG ++ WD+ + N TS+ G
Sbjct: 570 WNESEGSIKRTYKEFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGG 629
Query: 606 MGVFSVLEYHPDSS 647
+ L ++ D +
Sbjct: 630 LPALPHLRFNKDGN 643
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Frame = +3
Query: 240 TNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSG 419
T DG ++ C E +V T +G + + + + +S + + + A +
Sbjct: 205 TADGSVVIASCSEGTDIVLWHGK-TGRNLGHVDTNQLKNHMAA--VSPNGRFLAAAAFTA 261
Query: 420 LIKMWD---KETGVQLKIWR----SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
+K+W+ ++ G ++ R HK V L F E I + DG++R+W++
Sbjct: 262 DVKVWEIVYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWNI 318
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 32.3 bits (70), Expect = 0.30
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Frame = +3
Query: 363 YTFKISH-SNQSIVTAHKSGLIKMWDKETGVQLKIWRS------SHKGPVVKLA---FDS 512
+ FK Q +++ G+I +W+ T + WR SHK V +
Sbjct: 73 FAFKAKKLDRQYLLSGDSDGIIILWELSTLNNDQQWRHVLQLPLSHKKGVTCITAYMVSE 132
Query: 513 TDENIASGGSDGNVRLWDV 569
TD AS SDG V +WDV
Sbjct: 133 TDAMFASASSDGVVNVWDV 151
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHN---TCTSS 593
IK+WD T +Q ++ H G V L D+ + S DG ++LW N +
Sbjct: 334 IKVWDLNT-LQCRMTLKQHIGTVTSLL--CWDKCLISSSLDGTIKLWACSENESLKVVQT 390
Query: 594 LRGAMGVFSVLEYHPDSSKQLVF 662
+ + V ++ H +K ++F
Sbjct: 391 RKQELSVHTLCGMHDAEAKPIMF 413
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/62 (20%), Positives = 23/62 (37%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTS 590
K + W G+ + HK + +A + + S DG + +WD C
Sbjct: 164 KCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDGTLLIWDCNSGQCVR 223
Query: 591 SL 596
S+
Sbjct: 224 SI 225
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Frame = +3
Query: 231 IQWTNDGLQMLC-LCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIV-T 404
+ W+ +G ++ C D I V +VD S ++ + E N + + S + ++ +
Sbjct: 164 VAWSPNGKRLACGSMDGTICVFDVDR---SKLLHQLE--GHNMPVRSLVFSPVDPRVLFS 218
Query: 405 AHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
G + M D E G L S H V+ + IA+G SD VRLWD+
Sbjct: 219 GSDDGHVNMHDAE-GKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDL 272
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIA-SGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQ 653
H PV L F D + SG DG+V + D T S+ G ++ PD
Sbjct: 199 HNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGG-A 257
Query: 654 LVFGAAD 674
+ G++D
Sbjct: 258 IATGSSD 264
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIW-RSSHKGPVVKLAFDSTDENIASGGSDGNV 554
S +N+ + T + +++ + +I R++H G V +AF D +AS G D +V
Sbjct: 408 SPNNKMVATGSIDTCVIVYEVDKPASSRITARNAHLGGVNAVAFID-DCTVASSGEDASV 466
Query: 555 RLWDV 569
RLW +
Sbjct: 467 RLWHI 471
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 399 VTAHKSGLIKMWDKETGVQLKIWRSS--HKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
V++ K G+I +D +TG ++ S HKG + +++ + + + +D + ++W+V
Sbjct: 69 VSSDKKGMI--YDGKTGDKVGELASEDGHKGSIYAVSWSPDSKRVLTVSADKSAKVWEVA 126
Query: 573 HNTCTSSL 596
+ S+
Sbjct: 127 EDGTIGSV 134
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSL-RGAMGVFSVLEYHPDSSKQ 653
H+G V LA++S + SG D + +W+ S+ G ++ P++S +
Sbjct: 49 HQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDE 108
Query: 654 LVFGAADD 677
LV A D
Sbjct: 109 LVVSGAGD 116
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQL--KIWRSSHK-GPVVKLAFDSTDENIASGGSDGNVRLWDVGHNT 581
K I WD V++ K++R++ V + ++ +GG DG V ++D+
Sbjct: 276 KDPYILCWDIRKSVEIVYKLYRATENTNQRVFFDIEPCGRHLGTGGQDGLVHMYDLQTGN 335
Query: 582 CTSSLRGAMGVFSVLEYHP 638
S + A + +HP
Sbjct: 336 WVSGYQAASDTVNAFSFHP 354
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 465 WRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV 569
W + H + LA S +A+GG D +V LWD+
Sbjct: 201 WYTRHNKQSLALAVSSDGRYLATGGVDCHVHLWDI 235
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+ H G V L F + SG DG + +W+ H T S G
Sbjct: 260 TGHCGIVSSLCFREGTAELFSGSYDGTLSIWNAEHRTYIESCFG 303
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 438 KETGVQLKIWRS-SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGV 614
K G++L+ R+ +H + LA S +A+GG D +V +WDV + G
Sbjct: 207 KSHGMKLREPRNKNHSRESLALAVSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNT 266
Query: 615 FSVLEYHPDSSKQLVFGAAD 674
S L + +S +L G+ D
Sbjct: 267 VSCLCFRYGTS-ELYSGSFD 285
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDEN-IASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQ 653
H V +L +D + +A+ D +VRLWD CT + G + Y PD +
Sbjct: 65 HTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVE-LSGENINITYKPDGT-H 122
Query: 654 LVFGAADD 677
+ G DD
Sbjct: 123 VAVGNRDD 130
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDV---GHNTCTS-SLRGAMGVFSVLEYHPDS 644
HK V +A++S +ASG D R+W++ GH+ L+G L + P
Sbjct: 19 HKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKH 78
Query: 645 SKQLVFGAAD 674
S + + D
Sbjct: 79 SDLVATASGD 88
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/66 (25%), Positives = 32/66 (48%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V+ L++ S +++ S D VRLWD+ TC + V + ++++P
Sbjct: 467 HLDDVLDLSW-SKSQHLLSSSMDKTVRLWDLSSKTCLKVFSHSDYV-TCIQFNPVDDNYF 524
Query: 657 VFGAAD 674
+ G+ D
Sbjct: 525 ISGSLD 530
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
+HS+ IV+A + K+W VQ H G + F T + I + SDG VR
Sbjct: 238 AHSSGLIVSASEDRHAKIWKDGVCVQ----SLEHPGCIWDAKFLETGD-IVTACSDGVVR 292
Query: 558 LWDVGHNTCTSSL 596
+W V H+ +
Sbjct: 293 VWTVRHDAIADQM 305
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/94 (26%), Positives = 40/94 (42%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
+V+ +K+W +T +Q S H V LA D S DG++RLW +
Sbjct: 165 LVSGSSDASLKLWKGKTSLQTL---SGHTDTVRGLAV-MPDLGFLSASHDGSIRLWALSG 220
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ V+SV + H S L+ A++D
Sbjct: 221 EVLLEMVGHTSLVYSV-DAH---SSGLIVSASED 250
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 31.1 bits (67), Expect = 0.70
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 378 SHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVR 557
+HS+ IV+A + K+W VQ H G + F T + I + SDG VR
Sbjct: 238 AHSSGLIVSASEDRHAKIWKDGVCVQ----SLEHPGCIWDAKFLETGD-IVTACSDGVVR 292
Query: 558 LWDVGHNTCTSSL 596
+W V H+ +
Sbjct: 293 VWTVRHDAIADQM 305
Score = 29.1 bits (62), Expect = 2.8
Identities = 25/94 (26%), Positives = 40/94 (42%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
+V+ +K+W +T +Q S H V LA D S DG++RLW +
Sbjct: 165 LVSGSSDASLKLWKGKTSLQTL---SGHTDTVRGLAV-MPDLGFLSASHDGSIRLWALSG 220
Query: 576 NTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADD 677
+ V+SV + H S L+ A++D
Sbjct: 221 EVLLEMVGHTSLVYSV-DAH---SSGLIVSASED 250
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V+ LA+ S +++ S D VRLW++ TC + V + ++++P +
Sbjct: 512 HVDDVLDLAW-SKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYV-TCIQFNPVDDRYF 569
Query: 657 VFGAAD 674
+ G+ D
Sbjct: 570 ISGSLD 575
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 31.1 bits (67), Expect = 0.70
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGH 575
+ T IK W + G L S HK V L + + SG DG VRLW +
Sbjct: 600 VYTGSGDNTIKAWSLQDG-SLLCTMSGHKSVVSTLVV--VNGVLYSGSWDGTVRLWSLSD 656
Query: 576 NTCTSSL 596
N+ + L
Sbjct: 657 NSLLTVL 663
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V + + E +AS D V+LW + C L + F + +HP L
Sbjct: 674 HSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLL 732
Query: 657 VFG 665
V G
Sbjct: 733 VIG 735
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V + + E +AS D V+LW + C L + F + +HP L
Sbjct: 676 HSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLL 734
Query: 657 VFG 665
V G
Sbjct: 735 VIG 737
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V + + E +AS D V+LW + C L + F + +HP L
Sbjct: 676 HSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLL 734
Query: 657 VFG 665
V G
Sbjct: 735 VIG 737
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V + + E +AS D V+LW + C L + F + +HP L
Sbjct: 676 HSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLL 734
Query: 657 VFG 665
V G
Sbjct: 735 VIG 737
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
H V + + E +AS D V+LW + C L + F + +HP L
Sbjct: 676 HSSNVHSVCWSPNGELVASVSEDA-VKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLL 734
Query: 657 VFG 665
V G
Sbjct: 735 VIG 737
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 390 QSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNVRLWD 566
+ I +A G I++WD + + + H+G V L STD N+ S G+D VRLW+
Sbjct: 70 KGIFSASMDGDIRLWDISSRRTVCQF-PGHQGAVRGLTA-STDGNVLVSCGTDCTVRLWN 127
Query: 567 V 569
V
Sbjct: 128 V 128
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 528 ASGGSDGNVRLWDVGH-NTCTSSLR-GAMGVFSVLEYHPDSSKQLVFGAAD 674
ASG DG V++WD + T ++R G +E+ P + G AD
Sbjct: 184 ASGSDDGTVQMWDPRNGGTLEETVRPGGGAAICSVEFDPFGGSSIAVGCAD 234
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/63 (25%), Positives = 24/63 (38%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQL 656
HK V L + D +ASGG+D + +W+ L + + P S L
Sbjct: 297 HKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLL 356
Query: 657 VFG 665
G
Sbjct: 357 ASG 359
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 396 IVTAHKSGLIKMWD-KETGVQLKIWRSSHKGPVVKLAFDSTDENI-ASGGSDGNVRLWDV 569
+ TA + ++D ++ L + S H+G V ++ +D E + AS G D + +WD+
Sbjct: 277 LATASSDSTVALFDLRKLTAPLHVL-SKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDI 335
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 486 PVVKLAFDSTDENIASGGSDGNVRLWDVGHN 578
PV +AF ASGG DG V +WD G+N
Sbjct: 242 PVNAIAFHPIYGTFASGGCDGFVNIWD-GNN 271
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIA-SGGSDGNVRLWDVGHNTC 584
S H+ V+ + + ++ E + +GG DG +R WD+ C
Sbjct: 187 SGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGC 225
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWDV--GHNTCTSSLRGAMGVFSVLEYHPDS 644
++H G V L + + S GS +RLWD+ G NT + G + ++
Sbjct: 309 TAHYGVVTGLKATNDGMYLLSAGSYSRIRLWDIESGRNTLVNFETGRIQTDRAIQLDTSD 368
Query: 645 SKQLVF 662
LVF
Sbjct: 369 DPALVF 374
Score = 27.5 bits (58), Expect = 8.6
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +3
Query: 240 TNDGLQMLCLCDEA-IKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKS 416
TNDG+ +L + I++ ++++ +L+ ET + D+ S + ++V
Sbjct: 321 TNDGMYLLSAGSYSRIRLWDIESGRNTLVNFETGR-IQTDRAIQLDTS-DDPALVFVPCM 378
Query: 417 GLIK---MWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVG 572
+K MW T + L+ H V F+S D+ + + G+D + +W G
Sbjct: 379 KTVKGFGMWSGRTTLMLR----GHYESVNTCCFNSNDQELYTSGADRQIIVWSPG 429
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 396 IVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRL 560
+++A G I +WD T L + +H V+ + E++ SGG+D N+R+
Sbjct: 374 LLSASYDGKIMLWDLRTAWPLSVI-DTHNDKVLSADWWK-GESVVSGGADSNLRI 426
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAM 608
+H+G V + F +ASGG+D + +W+V S G++
Sbjct: 402 AHEGAVWTIKFSQDAHYLASGGADRVIHVWEVQECELMSMNEGSL 446
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 417 GLIKMWDKETGVQLKIWRSSHKGPV---VKLAFDSTDENIASGGSDGNVRLWDVGHNTCT 587
G+I++ T + + HKG + + S + + SGGSDG + LW H +
Sbjct: 111 GVIRVLSMITWKLARRYTGGHKGSIYCLMNFMASSGEALLVSGGSDGLLVLWSADHGADS 170
Query: 588 SSL 596
L
Sbjct: 171 REL 173
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 450 VQLKIWRS--SHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
++L+I++ HKG V ++F++ + + SG D V LWD
Sbjct: 47 LRLEIYKKLEKHKGCVNTVSFNAEGDVLISGSDDRRVVLWD 87
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 486 PVVKLAFDSTDENIASGGSDGNVRLWDVGHN 578
PV +AF A+GG DG V +WD G+N
Sbjct: 243 PVNSIAFHPIYGTFATGGCDGFVNIWD-GNN 272
>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane protein
kinase, putative
Length = 960
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 537 GSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFG 665
G N+R+ D+G N T + G +G S LE+ +S QL G
Sbjct: 166 GVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGG 208
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRS-----SHKGPVVKLAFDSTDENI-ASGGSDGNVRLWDVGHNTC 584
I +WD Q K+ + H+ + +++ +EN+ S G DG + +WD N
Sbjct: 193 ICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQM 252
Query: 585 TSSLRGAMGVFSVLEYHPDSSKQLVFGAAD 674
++ + L ++P + L ++D
Sbjct: 253 QHQVKVHEREVNYLSFNPFNEWVLATASSD 282
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 426 KMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
KMW +G Q + + H+GP+ +A+ +A+G D ++ WD
Sbjct: 97 KMWPLLSGGQ-PVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWD 142
>At1g80380.2 68414.m09410 phosphoribulokinase/uridine kinase-related
Length = 456
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 163 ALDYCFSKTKKSKQRIYFNDHIILSKPK*ELKIKTKSSTSLE 38
ALDY F TKK I +D + ++ + EL+ K + LE
Sbjct: 227 ALDYLFKTTKKKSATISVDDFYLTAEGQAELRKKNPGNALLE 268
>At1g16880.2 68414.m02039 uridylyltransferase-related similar to
[Protein-PII] uridylyltransferase (PII uridylyl-
transferase) (Uridylyl removing enzyme)
(UTase)(SP:Q9AC53) [Caulobacter crescentus]
Length = 213
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 618 SVLEYHPDSSKQLVFGAA 671
++LE+HP+SS QL GAA
Sbjct: 167 NLLEFHPESSSQLAMGAA 184
>At1g16880.1 68414.m02040 uridylyltransferase-related similar to
[Protein-PII] uridylyltransferase (PII uridylyl-
transferase) (Uridylyl removing enzyme)
(UTase)(SP:Q9AC53) [Caulobacter crescentus]
Length = 290
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 618 SVLEYHPDSSKQLVFGAA 671
++LE+HP+SS QL GAA
Sbjct: 167 NLLEFHPESSSQLAMGAA 184
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNT 581
HK + L + S + +ASGG+D + +W+ H+T
Sbjct: 291 HKSEICGLKWSSDNRELASGGNDNKLFVWN-QHST 324
>At3g48260.1 68416.m05267 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 516
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +3
Query: 423 IKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRG 602
+K W ++ ++ ++ SH PV+ D +NI G+ G V++ D+G R
Sbjct: 125 LKKWSRQI-LEGLVYLHSHDPPVIHR--DLKCDNIFINGNQGEVKIGDLGLAAILHRARS 181
Query: 603 AMGVFSVLEY 632
A V E+
Sbjct: 182 AHSVIGTPEF 191
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 471 SSHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
+ H+G V + F+ST + + SG D + LW+
Sbjct: 52 NGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWN 83
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 504 FDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHP 638
F DE + SG G++ +W ++ G V + LE HP
Sbjct: 329 FGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMVGDRRVVNQLESHP 373
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 474 SHKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
+H G V K+A +G DG V+LWD
Sbjct: 2373 AHLGSVTKIATIPRTSLFLTGSKDGEVKLWD 2403
>At5g12920.1 68418.m01482 expressed protein contains 3 weak WD-40
repeats (PF00400); low similarity to MEK kinase alpha
(GI:4028547); transcriptional repressor TUP1
(GI:3406654) [Dictyostelium discoideum]; Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (TGF-beta receptor interacting protein 1)
(TRIP-1) (SP:Q38884) [Arabidopsis thaliana]
Length = 442
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 354 DQIYTFKISHSNQSIVTAHKSGLIKMWDKETG 449
D I + +I NQ+I A K G+I +WD G
Sbjct: 196 DSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGG 227
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 477 HKGPVVKLAFDSTDENIASGGSDGNVRLWD 566
HKG V ++F++ + + SG D V LWD
Sbjct: 54 HKGCVNTVSFNADGDILLSGSDDRQVILWD 83
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 375 ISHSNQSIVTAHKSGLIKMWDKET-GVQL--KIWRSSHKGPVVKLAFDSTDENIASGGSD 545
++ + + T G +K+W +E G + ++++ K A ++ + SG SD
Sbjct: 183 VTTAESLVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQESAVTALVTSHMAVYSGSSD 242
Query: 546 GNVRLWDVG 572
G V W++G
Sbjct: 243 GAVNFWEMG 251
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +3
Query: 498 LAFDSTDENI-ASGGSDGNVRLWDVGHNTC 584
L F+ + NI ASG D V++WDV C
Sbjct: 220 LTFNWENRNIVASGSEDKKVKVWDVATGKC 249
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 411 KSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIA 530
K + W++ TG + K W++S K KLA + N+A
Sbjct: 512 KKKALSEWERHTGSKSKNWKTSVKVKSSKLALEDWMMNLA 551
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 435 DKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLW 563
DK ++ I + +H G V L F + D ++ S G D +R+W
Sbjct: 564 DKPASSRMTI-KGAHLGGVYGLGF-ADDSHVVSSGEDACIRVW 604
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 324 IGETEEDAENDQIYTFKISHSNQ-SIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKL 500
+G+T NDQI +SH Q +I A K I W + + + P+
Sbjct: 964 VGDTRVQFHNDQIQLL-VSHETQLAIYDASKMECIHKW---------VPQEALSSPITSA 1013
Query: 501 AFDSTDENIASGGSDGNVRLWD 566
++ + + + +DGN+ ++D
Sbjct: 1014 SYSCNSQLVYASFADGNIAVFD 1035
>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
(VPS41) 99.8% identical to Vacuolar assembly protein
VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
similar to vacuolar assembly protein vps41 GI:1835787
from [Lycopersicon esculentum]
Length = 980
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 375 ISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNV 554
I+ + + I G +++ D G Q+K +R+ H PV + FD+ E I S DG+V
Sbjct: 65 IAVAARMIALGTHDGTVRILDL-LGNQVKEFRA-HTAPVNDINFDTEGEYIGSCSDDGSV 122
>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
GI:3172025, GI:3172044; identical to cDNA putative
aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
Length = 1337
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +3
Query: 480 KGPVVKLAFDSTDENIASGGSDGNVRLWDVGH---NTCTSSLRGAMGVFSVLEYHPDSSK 650
K V FD I SG D + D GH C L A VF EYHP
Sbjct: 512 KSLAVGFLFDFLYPLIESGSWDSEGKHID-GHIDPTICLPLLSSAQQVFESKEYHPVGEA 570
Query: 651 QLVFGA 668
+ FGA
Sbjct: 571 IIKFGA 576
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +3
Query: 384 SNQSIVTAHKSGLI---KMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNV 554
S+Q ++ + G + +M + GVQ + P+ + D ++ I SGG D
Sbjct: 354 SDQYLMASSMDGTLYDQRMVKRGVGVQTYEGHVNSHTPI-EFGIDPSERFILSGGDDCYT 412
Query: 555 RLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQ 653
R+W + S + + V SV+ + D ++
Sbjct: 413 RIWSIKSGQLMSENKFSNSVPSVVCWSADERQR 445
>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 4
WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
sapiens]
Length = 1144
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Frame = +3
Query: 375 ISHSNQSIVTAHKSGLIKMW----------DKETGVQLKIWRSSHKGPVVKLAFDSTDEN 524
+ H N+ + T HK G I+ W D + ++ +H+GPV + S +
Sbjct: 226 VDHGNRLVWTGHKDGKIRAWKMNQPNTTTADDSKPFKERLSWQAHRGPVNYIVISSYGD- 284
Query: 525 IASGGSDGNVRLW 563
+ S G +++W
Sbjct: 285 MWSCSDGGVIKIW 297
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,477
Number of Sequences: 28952
Number of extensions: 265228
Number of successful extensions: 1276
Number of sequences better than 10.0: 174
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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