Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m08
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 516 EKYDARRRWYT*NFRNVMVMIMIS 445
           E Y+ RRRW      N+M ++M S
Sbjct: 872 EFYNQRRRWVPSTIANIMDLLMDS 895


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 516 EKYDARRRWYT*NFRNVMVMIMIS 445
           E Y+ RRRW      N+M ++M S
Sbjct: 872 EFYNQRRRWVPSTIANIMDLLMDS 895


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 516 EKYDARRRWYT*NFRNVMVMIMIS 445
           E Y+ RRRW      N+M ++M S
Sbjct: 872 EFYNQRRRWVPSTIANIMDLLMDS 895


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 516 EKYDARRRWYT*NFRNVMVMIMIS 445
           E Y+ RRRW      N+M ++M S
Sbjct: 872 EFYNQRRRWVPSTIANIMDLLMDS 895


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 263 SSRQPKHHHNAWLFIWTKYHLIN 331
           ++    HHH+A   I  ++H++N
Sbjct: 316 ATNNQNHHHHAGHHIHAQHHVVN 338


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -1

Query: 559 SPNKVLRKGHDPQH*EIRRTEEVVHIEFQKCDGDDNDFRFP 437
           SP+  +   +DP+  +   +  +   E    DG D D+ +P
Sbjct: 107 SPDSFVAAANDPEKMKNMTSSAIEFFETYNYDGLDVDWEYP 147


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 289 VMMFRLTRRMD 257
           VMMFR+ RR D
Sbjct: 398 VMMFRMARRYD 408


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,807
Number of Sequences: 336
Number of extensions: 3411
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)