Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m08
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0421 + 21990034-21990392,21991691-21992681                       24   5.5  

>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 23.8 bits (49), Expect(2) = 5.5
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 445 GNHYHHHH 468
           G+H+HHHH
Sbjct: 153 GHHHHHHH 160



 Score = 23.0 bits (47), Expect(2) = 5.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 448 NHYHHHHISEIL 483
           +H+HHHH  ++L
Sbjct: 155 HHHHHHHHHQLL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,361
Number of Sequences: 37544
Number of extensions: 317700
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)