BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte10m08 (697 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074) 35 0.072 SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 5.4 SB_39538| Best HMM Match : VWA (HMM E-Value=0) 28 8.3 >SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074) Length = 996 Score = 34.7 bits (76), Expect = 0.072 Identities = 25/101 (24%), Positives = 38/101 (37%) Frame = -1 Query: 643 NKKKRRLWNSASTSLSTARRGQE*MEEHSPNKVLRKGHDPQH*EIRRTEEVVHIEFQKCD 464 N R W A T T Q+ +H + +IR E E K + Sbjct: 71 NHYARMCWGGAKTKDETTSERQDQRWKHQSRNFGSRNKGKGRRQIRHVERESDTESSKTE 130 Query: 463 GDDNDFRFPASFSLSQKSPTCESHYFPKCFIWIE*GAQTSL 341 D++ RF ++ + S S KC IWI G +T++ Sbjct: 131 SDEDISRFLKHVNIRKTSTVPSSTKANKCRIWIN-GVKTTV 170 >SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 736 Score = 24.6 bits (51), Expect(2) = 5.4 Identities = 7/12 (58%), Positives = 10/12 (83%) Frame = +1 Query: 448 NHYHHHHISEIL 483 +H+HHHHI I+ Sbjct: 291 HHHHHHHIINII 302 Score = 22.2 bits (45), Expect(2) = 5.4 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = +1 Query: 376 NILENNETHM--LAIFVKGKTMLEIGNHYHHHH 468 N+ +++ H+ + K K +H+HHHH Sbjct: 232 NVTRHSDMHLRFYGCYHKLKNPRHRYHHHHHHH 264 >SB_39538| Best HMM Match : VWA (HMM E-Value=0) Length = 3208 Score = 27.9 bits (59), Expect = 8.3 Identities = 13/44 (29%), Positives = 30/44 (68%), Gaps = 3/44 (6%) Frame = -2 Query: 480 NFRNVMVMIMISDFQHRFPFHKNRQHVSLII---FQNVLYGLNR 358 +FR+++ ++ I+ H+FP ++ HV+++I F NV++ L++ Sbjct: 2563 HFRSLLEIVKIA--YHQFPVSRSDVHVAIVIYGAFANVVFNLDQ 2604 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,974,851 Number of Sequences: 59808 Number of extensions: 390834 Number of successful extensions: 948 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 914 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1817559367 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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