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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m08
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 35   0.072
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   5.4  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         28   8.3  

>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 25/101 (24%), Positives = 38/101 (37%)
 Frame = -1

Query: 643 NKKKRRLWNSASTSLSTARRGQE*MEEHSPNKVLRKGHDPQH*EIRRTEEVVHIEFQKCD 464
           N   R  W  A T   T    Q+   +H       +       +IR  E     E  K +
Sbjct: 71  NHYARMCWGGAKTKDETTSERQDQRWKHQSRNFGSRNKGKGRRQIRHVERESDTESSKTE 130

Query: 463 GDDNDFRFPASFSLSQKSPTCESHYFPKCFIWIE*GAQTSL 341
            D++  RF    ++ + S    S    KC IWI  G +T++
Sbjct: 131 SDEDISRFLKHVNIRKTSTVPSSTKANKCRIWIN-GVKTTV 170


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 24.6 bits (51), Expect(2) = 5.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 448 NHYHHHHISEIL 483
           +H+HHHHI  I+
Sbjct: 291 HHHHHHHIINII 302



 Score = 22.2 bits (45), Expect(2) = 5.4
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 376 NILENNETHM--LAIFVKGKTMLEIGNHYHHHH 468
           N+  +++ H+     + K K      +H+HHHH
Sbjct: 232 NVTRHSDMHLRFYGCYHKLKNPRHRYHHHHHHH 264


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/44 (29%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = -2

Query: 480  NFRNVMVMIMISDFQHRFPFHKNRQHVSLII---FQNVLYGLNR 358
            +FR+++ ++ I+   H+FP  ++  HV+++I   F NV++ L++
Sbjct: 2563 HFRSLLEIVKIA--YHQFPVSRSDVHVAIVIYGAFANVVFNLDQ 2604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,974,851
Number of Sequences: 59808
Number of extensions: 390834
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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