Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m08
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.     29   2.4  
U41270-4|ABC71847.1|  266|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical
           protein T15D6.2 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 283 SSQCMAVYLDQISFDKLRLAETSARPIQSI*NILENNETHMLAIFVKGKTMLEIGN 450
           S  C+AVY   + F  L +A+ S+RP   + + LE N T++L   +K +  LE+ N
Sbjct: 7   SFSCVAVYGSLVIFTYLFVAKPSSRPPTDLLDDLEINCTNILQ-GLKNEKQLELIN 61


>AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 283 SSQCMAVYLDQISFDKLRLAETSARPIQSI*NILENNETHMLAIFVKGKTMLEIGN 450
           S  C+AVY   + F  L +A+ S+RP   + + LE N T++L   +K +  LE+ N
Sbjct: 7   SFSCVAVYGSLVIFTYLFVAKPSSRPPTDLLDDLEINCTNILQ-GLKNEKQLELIN 61


>U41270-4|ABC71847.1|  266|Caenorhabditis elegans Hypothetical
           protein AH9.6 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 630 DDFGIQHQRRYPLRGEDRSE----W-RNIVLIKCSVKVTTLSTEKYDARRR 493
           DD G   +  Y L GE R      W RN+ L+  ++ +T L  E Y  RR+
Sbjct: 194 DDVGYALKDYYELNGEQRDHSVPMWARNLFLVCLALVITALLVEWYVVRRK 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,633
Number of Sequences: 27780
Number of extensions: 303578
Number of successful extensions: 863
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)