Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m08
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.4  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 437 WKSEIIIITITFLKFYVYHLLRASYFSVLRVVTFT 541
           W+    ++ ++  K   Y    +SY SVL +V F+
Sbjct: 102 WQQYPWVLGVSLCKIRAYVSEMSSYVSVLTIVAFS 136


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 612 HQRRYPLRGEDRSEWRNIVLIKCS 541
           H R   LR EDR+ +RN     CS
Sbjct: 231 HSRYEDLRHEDRNSYRNDGERSCS 254


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 451 HYHHHHISEIL 483
           H+HHHH ++ L
Sbjct: 351 HHHHHHQTQSL 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,584
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)