Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m08
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    30   1.7  
At1g21326.1 68414.m02666 VQ motif-containing protein contains PF...    29   3.9  
At5g23200.1 68418.m02713 expressed protein                             28   5.1  
At1g49010.1 68414.m05495 myb family transcription factor contain...    24   7.9  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    24   9.1  

>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -1

Query: 640  KKKRRLWNSASTSLSTARRGQE*MEEHSPN----KVLRKGHDPQH*EIRRTEEVVHIEFQ 473
            K+ ++L    S+S+ T    ++ ++E        KVLRK  D    ++ + EE+     +
Sbjct: 938  KQLKQLREQISSSMGTKDEVKQALDEKEKTEERLKVLRKELDALRNDLSKAEEITKAAKK 997

Query: 472  KCDGD 458
            KCDG+
Sbjct: 998  KCDGE 1002


>At1g21326.1 68414.m02666 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 239

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 391 NETHMLAIFVKGKTMLEIGNHYHHHH 468
           N ++ L  FV G+  ++   HYHHHH
Sbjct: 132 NISNELGTFVGGEGTMDQYYHYHHHH 157


>At5g23200.1 68418.m02713 expressed protein
          Length = 399

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 670 AVSSSTHLSNKKKRRLWNSASTSLSTARRGQE*MEEHSPNKVLRKGHDPQH 518
           AV ++T  +     RLW + S  L  + +G+E +E  +P   L  GH   H
Sbjct: 246 AVKANTKTAENGSDRLWKALSKPLEGSGKGKEVLERRNP---LAFGHLANH 293


>At1g49010.1 68414.m05495 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 314

 Score = 23.8 bits (49), Expect(2) = 7.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 442 IGNHYHHHH 468
           +G H+HHHH
Sbjct: 277 MGTHHHHHH 285



 Score = 22.2 bits (45), Expect(2) = 7.9
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 448 NHYHHHHI 471
           +H+HHHH+
Sbjct: 281 HHHHHHHL 288


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / haloacid
            dehalogenase-like hydrolase family protein /
            heavy-metal-associated domain-containing protein similar
            to cadmium efflux pump protein from Geobacillus
            stearothermophilus [GI:16753175], cadmium resistance
            protein B from Staphylococcus aureus [GI:14020985];
            T20K24.13 has been merged with T20K24.12 per suggestion
            of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 24.2 bits (50), Expect(2) = 9.1
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +1

Query: 448  NHYHHHHIS 474
            +H+HHHH+S
Sbjct: 1163 HHHHHHHVS 1171



 Score = 21.4 bits (43), Expect(2) = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 439  EIGNHYHHHH 468
            E+ +H HHHH
Sbjct: 1153 ELCSHRHHHH 1162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,969,358
Number of Sequences: 28952
Number of extensions: 269678
Number of successful extensions: 852
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)