Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10m07
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0372 + 20726103-20726139,20726266-20726302,20726953-207270... 33 0.25
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 33 0.33
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 31 0.77
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 30 1.8
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 3.1
06_03_0433 - 20718726-20719895 29 4.1
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 29 4.1
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 29 4.1
06_03_1324 + 29322459-29322515,29322720-29322819,29323049-293232... 28 7.2
06_02_0079 - 11512747-11512770,11513281-11513321,11513409-115135... 28 7.2
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 28 9.5
>05_04_0372 +
20726103-20726139,20726266-20726302,20726953-20727048,
20728343-20728625,20728862-20728981,20729072-20729284
Length = 261
Score = 33.1 bits (72), Expect = 0.25
Identities = 22/109 (20%), Positives = 46/109 (42%)
Frame = +1
Query: 415 TASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAV 594
TA V + K + +GL + ++ + L +++ RK+ C + V ++
Sbjct: 82 TAYVVVFLVFASTHKTRLRTLGLAAAVASVFAAVALVSLLALHGQHRKLLCGVAATVCSI 141
Query: 595 IGMSTIVSFITVHYNTEILMYAMLATAVVVFVCILLACSNFDFTKWFIY 741
++ +S + + T+ + Y ++ VF+C T WFIY
Sbjct: 142 CMYASPLSIMRLVIKTKSVEYMPFLMSLAVFLC---------GTSWFIY 181
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Frame = +1
Query: 406 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCS--ECARKMPCNIVC 579
L+ TA+ +V + FF + G+ I +I L F++ C +K P N++
Sbjct: 47 LLLTAAVAAVVVKVRAISHFF--VSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLIL 104
Query: 580 LVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVVF 687
L L + +S V + ++++ + + T VVVF
Sbjct: 105 LGLFTVAISFAVGMTCAFTSGKVILESAILTTVVVF 140
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 403 MLMCTASFTVL-VFITPDMKVFFQRIGL--VIGIPAMILIIGLSFVMSCSECARKMPCNI 573
M +CT +F ++ + +T V IGL V GI A++ I+ FV+ + MP +
Sbjct: 636 MSICTLTFWIVSIIVTYAFPVMLSSIGLIGVCGIYAVVCIVSFIFVLIKVPETKGMPLAV 695
Query: 574 VCLVLAV 594
+ LAV
Sbjct: 696 IANSLAV 702
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 64 IRTMPKDKEINENSNEVQENRITEHSNEDTANERKSQNNE 183
I TMPK K +N N N++Q N SN + + QNN+
Sbjct: 142 ISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLYLQNNQ 181
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/90 (23%), Positives = 42/90 (46%)
Frame = -1
Query: 507 NHGWYANY*ADPLKKHFHIGRDKHQNGE*CCAH*HYKNYNEHKTNEIIPSLRIIFQRRCA 328
+ G A+ A PL+K+ + D C AH + + +T+ +++ Q
Sbjct: 198 SRGSEASSNAPPLRKNASMSSDISDVSSQCSAH----SVSARRTSSWCFDEKVLIQSLYK 253
Query: 327 IIKSVAS*HPPVVLILSSIELVHHNTRIFS 238
++ SVA +P ++ I +L+H + R +S
Sbjct: 254 VMVSVAENNPVILYIRDVDQLLHRSQRTYS 283
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +1
Query: 79 KDKEINENSNEVQENRITEHSNEDTANERKSQNNE 183
++KE+ +NE +E T ++E ++++ +N+E
Sbjct: 729 REKEMERRANEAKEKAATAENSESPESKKEKENSE 763
>06_03_0433 - 20718726-20719895
Length = 389
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +1
Query: 94 NENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVK-GTENERKNPSI--VVY 264
+E++NE Q N ++ SNE+ A ++++ +++ + L DD K GT++E + ++
Sbjct: 167 DESTNEDQSNVKSDGSNEEEAEKKEAVDSQNASE--SLSDDAKGGTDDEHSSGTLPDETG 224
Query: 265 QFYGAQNQNDWGMSGGNAFDNGAPPLEYDPKTRND 369
QN+N + D + + + + N+
Sbjct: 225 NLPSGQNENSQSDATSTTSDASSEAVHIETGSENE 259
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 372 RSFCVHYSFYNVNVHSIIHRSGVYHARYE--SVFSKDRLSNWHTSHDFNYWA 521
RS HY YN V H YH+ Y+ S ++ ++ +HDF +A
Sbjct: 117 RSKIYHYKIYNGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFA 168
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 96 INFLIFWHCPNFLSL 52
+ +LIFWH PN LSL
Sbjct: 1365 LEYLIFWHLPNLLSL 1379
>06_03_1324 +
29322459-29322515,29322720-29322819,29323049-29323266,
29323767-29324305,29324396-29325125
Length = 547
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 481 LVIGIPAMILIIGLSFVMSCSECAR 555
L +GIPAM+L +GLS +++ S R
Sbjct: 224 LGLGIPAMVLAVGLSCLVAASRAYR 248
>06_02_0079 -
11512747-11512770,11513281-11513321,11513409-11513505,
11513555-11513965,11514493-11514665,11514829-11516008
Length = 641
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 571 IVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVV-FVCILLACSNFDFTKW 732
IV L + + G+S + F+ E L ++A ++VV CI L C+ F KW
Sbjct: 461 IVILAVLISGLSLLFPFLP-WLPYEYLSTIVIAFSIVVGCCCIALPCALFGSNKW 514
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/93 (22%), Positives = 37/93 (39%)
Frame = +1
Query: 406 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLV 585
L TA+ V + FF + +L + L + +K P N++ L
Sbjct: 43 LAMTAAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLG 102
Query: 586 LAVIGMSTIVSFITVHYNTEILMYAMLATAVVV 684
L + +S V + + +++ A TAVVV
Sbjct: 103 LFTVAISFAVGMTCAYTSGKVIFEAAALTAVVV 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,555,091
Number of Sequences: 37544
Number of extensions: 437064
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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