Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m07
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    36   0.022
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    30   1.5  
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    29   2.6  
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC...    29   3.4  
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC...    29   3.4  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    29   3.4  
At1g03070.1 68414.m00281 expressed protein low similarity to N-m...    29   3.4  
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami...    28   5.9  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   5.9  
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    28   5.9  
At4g40020.1 68417.m05666 hypothetical protein                          28   7.9  
At3g28770.1 68416.m03591 expressed protein                             28   7.9  
At2g22795.1 68415.m02704 expressed protein                             28   7.9  

>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/117 (19%), Positives = 50/117 (42%)
 Frame = +1

Query: 334 PPLEYDPKTRNDXXXXXXXXXXXMLMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILI 513
           P +  +P+ R              L+ T +    V     + +FF   GL + +  +I+I
Sbjct: 26  PAMHENPELRWGFIRKVYSIIAFQLLATVAVAATVVTVRPIALFFATTGLGLALYIVIII 85

Query: 514 IGLSFVMSCSECARKMPCNIVCLVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVV 684
             L  +       +K P N + L +  + ++ +V       N ++++ +++ T+VVV
Sbjct: 86  TPLIVLCPLYYYHQKHPVNYLLLGIFTLALAFVVGLTCAFTNGKVILESVILTSVVV 142


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 406 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCS 543
           L+C     +L+   P + +FF  I L I +  + +II LSF++S S
Sbjct: 120 LICFHLRFLLLLAVPPLYIFFLVINLRIFLRLVFVIIALSFILSIS 165


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/94 (21%), Positives = 40/94 (42%)
 Frame = +1

Query: 406 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLV 585
           L+ T   + +V+    +  F       + +  +IL++ L  +       +K P N + L 
Sbjct: 40  LLVTVGVSAVVYFVRPIPEFITETHRGLAVFFVILLLPLLLLWPLLAFEKKHPINCIVLS 99

Query: 586 LAVIGMSTIVSFITVHYNTEILMYAMLATAVVVF 687
           +  + +S  V          I++ A + TAV+VF
Sbjct: 100 IFTLSISFSVGICCSLSQGRIVLEAAILTAVMVF 133


>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
           putative contains similarity to acyl-CoA binding protein
           2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 362

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 281 KIRTTGGCQEA---TLLIMAHLRWNMIRRLGMIS 373
           KI T G C+EA    ++I A  +WN  ++LG +S
Sbjct: 264 KIATEGSCREAQPMAVMISARAKWNAWQKLGNMS 297


>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
           putative contains similarity to acyl-CoA binding protein
           2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 364

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 281 KIRTTGGCQEA---TLLIMAHLRWNMIRRLGMIS 373
           KI T G C+EA    ++I A  +WN  ++LG +S
Sbjct: 264 KIATEGSCREAQPMAVMISARAKWNAWQKLGNMS 297


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/88 (21%), Positives = 35/88 (39%)
 Frame = +1

Query: 76  PKDKEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTENERKNPSI 255
           P   + N N++    N   +++N +  N     NN  + D    G++  G  N   + + 
Sbjct: 64  PPSPQGNNNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNGNDNN- 122

Query: 256 VVYQFYGAQNQNDWGMSGGNAFDNGAPP 339
                 G  N N+   +GG + +   PP
Sbjct: 123 -GNNNNGNNNDNNNQNNGGGSNNRSPPP 149


>At1g03070.1 68414.m00281 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/94 (21%), Positives = 43/94 (45%)
 Frame = +1

Query: 403 MLMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCL 582
           +L   A  + +VF+ P + VFF      + +  +++I  L  +       +K P N + L
Sbjct: 50  LLATIAVASTVVFVRP-IAVFFATTSAGLALWIVLIITPLIVMCPLYYYHQKHPVNYLLL 108

Query: 583 VLAVIGMSTIVSFITVHYNTEILMYAMLATAVVV 684
            +  + ++  V       + ++++ A + T VVV
Sbjct: 109 GIFTVALAFAVGLTCAFTSGKVILEAAILTTVVV 142


>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
           protein similar to TAR RNA loop binding protein [Homo
           sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
           rRNA Methylase (RNA methyltransferase, TrmH) family
          Length = 1850

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/87 (22%), Positives = 41/87 (47%)
 Frame = +1

Query: 61  KIRTMPKDKEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTENER 240
           KI  +  +  + + S  + ++ ++     +T +E+K + N ++  MTR     K T  E+
Sbjct: 345 KIGLVVDESLVRKQSLHILKSVLSIIEVSETISEKKPEGNSVNRSMTR-----KETWAEK 399

Query: 241 KNPSIVVYQFYGAQNQNDWGMSGGNAF 321
           +  S+ V + YG+ +       G  AF
Sbjct: 400 EAKSLGVGELYGSVDSGLTSQQGWQAF 426


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/86 (22%), Positives = 33/86 (38%)
 Frame = -1

Query: 630 HRDERNNCGHSYNR*NKTHNVARHFSGTLRTRHHETQPNN*NHGWYANY*ADPLKKHFHI 451
           H    + C HS++  + +H    H   +   +H E   ++ +H    ++  D    H H 
Sbjct: 547 HAHGGSGCTHSHSHQSHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHD---HHHHS 603

Query: 450 GRDKHQNGE*CCAH*HYKNYNEHKTN 373
              KH+     C H H   +  H  N
Sbjct: 604 HSHKHEE----CNHNHDHEHQSHSHN 625


>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +1

Query: 463 FFQRIGLVIGIPAMIL----IIGLSFVMSCSECAR 555
           FF++ GL   IPA IL     +GL+F   CS   R
Sbjct: 44  FFEKCGLFFAIPACILEMLYCLGLAFPQMCSNFVR 78


>At4g40020.1 68417.m05666 hypothetical protein
          Length = 615

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 58  KKIRTMPKDKEINENSNEVQENRIT--EHSNEDTANERKSQNNEIHIDMTRLG 210
           KKI    K +E  EN  E +E++    EHS +    E+K Q ++ + D   +G
Sbjct: 396 KKIEEKEKKEEKKENKKEKKESKKEKKEHSEKKEDKEKKEQTHQ-NFDKRMIG 447


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  KEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTENERK 243
           K  NE+S E ++   ++ SNE   N+  ++   ++I    +GD  K    E K
Sbjct: 469 KTNNESSKE-EKREESQRSNEVYMNKETTKGENVNIQGESIGDSTKDNSLENK 520


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 58  KKIRTMPKDKEINENSNEVQENRITEHSNEDTANERKSQNNE 183
           K+  T  K+KE   +SNE QEN  TE   ++   E + + +E
Sbjct: 616 KEKETETKEKE-ESSSNESQENVNTESEKKEQVEENEKKTDE 656


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,982
Number of Sequences: 28952
Number of extensions: 373620
Number of successful extensions: 1130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)