Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m06
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...   155   8e-39
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   2.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.7  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   6.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   8.3  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score =  155 bits (375), Expect = 8e-39
 Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 7/192 (3%)
 Frame = +3

Query: 84  LILVFLTISHSYALNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVS 263
           L+ +FL  S  +   NGL + P MGW +W ++ C  D          ES+I   A  +  
Sbjct: 12  LVFLFLFFSDVHGSYNGLGLKPQMGWNSWNKYACDID----------ESIILNNAKAIKE 61

Query: 264 EGYLDAGYEYLGIDDCWLEKTRD-DKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDY 440
           EG LD GYEY+ +DDCW +  R+   GRL  +  +FPNG+ ++A  +H  G KFGMY   
Sbjct: 62  EGLLDLGYEYIVMDDCWSKHERNATTGRLEANPDKFPNGIGSMAKKLHDMGFKFGMYSSA 121

Query: 441 GNLTCAGYPGVLGNEKIDINTFVEWEIDYLKLDGCYID-----PIQMDKGYPDFGKLLNA 605
           G  TCAG+PG L +E+ID +TF +W +DYLK D C+ +     P+   + Y      LN 
Sbjct: 122 GKYTCAGFPGSLNHEQIDADTFADWGVDYLKYDNCFNEGKSGVPLISYERYKRMSDALNK 181

Query: 606 TGRSILYS-CSW 638
           TGR I YS C W
Sbjct: 182 TGRPIFYSLCQW 193


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 508 SNGKSII*SSMDVILTRYKWIKAIQTSV 591
           S G  I+ + +D I+ +YKW K++  SV
Sbjct: 531 SGGSRIVTAVLDTIIKKYKWGKSLLESV 558


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -3

Query: 373 FGNRFLSGTSRPLSSRVFSNQQSSIPKYSYPASRYPSLTIKSAVLFIRLSLMHSLGYFSQ 194
           FG   LSG+ +P  SR    ++S + K+                L + L +  SLG   +
Sbjct: 47  FGKSPLSGSRKPRRSRSLHKERSYMRKFFDMDMEESKDFENDQSLLVTLKVSTSLGQKIE 106

Query: 193 SVIHLKRSH 167
           +++H K S+
Sbjct: 107 NILHPKLSN 115


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -2

Query: 182 PKTFPCQPAHWWCH 141
           P   P  P  WWCH
Sbjct: 216 PDWIPFHPGKWWCH 229


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 527  IIDFPFDKCVDID 489
            +IDF  DKC+D+D
Sbjct: 2438 LIDFTIDKCLDVD 2450


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 355 SGTSRPLSSRVFSNQQSSIPKYSYPASRYPSLTI 254
           S TS    S +FSN  SSI   S    + PSL+I
Sbjct: 670 SATSNSQLSSIFSNLSSSISDASSNVLQNPSLSI 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,003
Number of Sequences: 5004
Number of extensions: 74392
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)