Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m06
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4787| Best HMM Match : Melibiase (HMM E-Value=2.6e-07)             278   3e-75
SB_19518| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   4e-29
SB_36268| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_12227| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   2e-06
SB_53435| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_24481| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.044
SB_39954| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_26356| Best HMM Match : Pkinase (HMM E-Value=0.00044)               32   0.54 
SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              31   0.95 
SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_32199| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_43932| Best HMM Match : Baculo_44 (HMM E-Value=9.7)                 30   1.7  
SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_16685| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)               29   5.1  
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_27551| Best HMM Match : rve (HMM E-Value=6.3e-25)                   28   8.9  

>SB_4787| Best HMM Match : Melibiase (HMM E-Value=2.6e-07)
          Length = 407

 Score =  278 bits (682), Expect = 3e-75
 Identities = 118/214 (55%), Positives = 152/214 (71%), Gaps = 1/214 (0%)
 Frame = +3

Query: 87  ILVFLTISHSYA-LNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVS 263
           +LV   +SH  A +++GLA+TPPMGW+ WERFRC  DC+  P+ECI E L    AD M+ 
Sbjct: 9   LLVLCLLSHRVACMDDGLALTPPMGWMAWERFRCNVDCDNDPDECIHERLFMAMADEMMC 68

Query: 264 EGYLDAGYEYLGIDDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYG 443
           +GYL+AGY+Y+ IDDCW  K R   G L  D  RFP+G+K +A Y+HSKGLK G+Y DYG
Sbjct: 69  DGYLEAGYKYVCIDDCWTSKDRGPNGELQADPNRFPSGIKELAKYVHSKGLKLGIYADYG 128

Query: 444 NLTCAGYPGVLGNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSIL 623
            +TC  YPG +   + D+ TF  W++DYLK+DGC+ DP +MD GYP   K LNATGR I+
Sbjct: 129 TMTCERYPGSIDRLEKDMRTFASWDVDYLKMDGCFADPSKMDTGYPLASKYLNATGRPIM 188

Query: 624 YSCSWPAYQEEKKILPNYASIAEHCNLWRNYDDI 725
           +SCSWP YQ  K   P+Y +IA+HC+LWRNY DI
Sbjct: 189 FSCSWPFYQVLKGQKPDYKNIAKHCHLWRNYIDI 222


>SB_19518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score =  125 bits (301), Expect = 4e-29
 Identities = 54/89 (60%), Positives = 63/89 (70%)
 Frame = +3

Query: 459 GYPGVLGNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYSCSW 638
           GY G  G E I I+TF  W  DYLKLDGCY DP  M+KGYP+F + LNATGR I+YSC W
Sbjct: 36  GYRGA-GYEFISIDTFASWGADYLKLDGCYSDPKTMNKGYPEFRRALNATGRPIVYSCEW 94

Query: 639 PAYQEEKKILPNYASIAEHCNLWRNYDDI 725
           P+Y   + +  NY  IAE+CN WRNYDDI
Sbjct: 95  PSYMIGRNLTVNYTDIAENCNTWRNYDDI 123



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 27/48 (56%), Positives = 31/48 (64%)
 Frame = +3

Query: 162 LTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLGID 305
           + WERFRC  DCE  PN CISE L    AD M  +GY  AGYE++ ID
Sbjct: 1   MDWERFRCNIDCEHDPNNCISEHLFMEIADRMAEDGYRGAGYEFISID 48


>SB_36268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 31/50 (62%), Positives = 35/50 (70%)
 Frame = +3

Query: 501 TFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYSCSWPAYQ 650
           TF +W +DYLKLDGCY DP   D GYP     LN TGR I++SCSWP YQ
Sbjct: 1   TFAKWGVDYLKLDGCYSDPKTYDTGYPKVTTALNVTGRPIVFSCSWPFYQ 50


>SB_12227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 35.5 bits (78), Expect(2) = 2e-06
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +3

Query: 225 ESLIKRTADLMVSEGYLDAGYEYLGIDD 308
           E+L+K  AD + S+G+ +AGYEY+ ID+
Sbjct: 2   ENLLKEMADRIASDGFREAGYEYVCIDN 29



 Score = 34.3 bits (75), Expect(2) = 2e-06
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 306 DCWLEKTRDDKGRLVPDRKRFPNGMKAIADY 398
           DCW    R    RL  D  RFPN +K +ADY
Sbjct: 64  DCWSSMNRTADKRLERDITRFPNTIKKLADY 94


>SB_53435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 306 DCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAG 461
           DCW +  R   G L PD KRFP+G+ A+A Y+    +  G    Y + T  G
Sbjct: 1   DCWTDHNRTADGELQPDPKRFPSGIPALAQYVSINRIPIGSLAAYLHQTPRG 52


>SB_24481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = +3

Query: 222 SESLIKRTADLMVSEGYLDAGYEYLGID 305
           +E+L+K  AD + S+G+ +AGYEY+ ID
Sbjct: 122 NENLLKEMADRIASDGFREAGYEYVCID 149


>SB_39954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 267 GYLDAGYEYLGIDDCWLEKTRDDKG 341
           G LD G  YL ID CW E +R  KG
Sbjct: 19  GQLDDGIRYLDIDACWEESSRYTKG 43


>SB_26356| Best HMM Match : Pkinase (HMM E-Value=0.00044)
          Length = 634

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 564 MDKGYPDFGKLLNATGRSILYSCSWPAYQE-EKKILPNYASIAEHCNLWRNY 716
           M+KG    G +L+ T  S++Y CS PA+   +K ++      A    +W+ Y
Sbjct: 437 MNKGPVQLGAVLSRTANSVVYECSSPAWGGLDKSVVKVVKRDALDDKVWKQY 488


>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 568

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 468 GVLGNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNA 605
           G+LGN  ID    + W+I  L LD    +       Y DF K  NA
Sbjct: 408 GILGNVTIDNVQILNWDIYRLNLDNVVSNESLFKDSYTDFYKTDNA 453


>SB_37432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1006

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 348 VPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAGYPGVLGNEKIDINTFVEWEIDY 527
           +PD  +  N  K I +YI S   +   Y   G      YP  L N     N + +W +D 
Sbjct: 700 IPDGSKANNHRKKITEYIASNNSRQEFYPPLGKFVKYLYPEPLHNSN---NAWQQWNLDV 756

Query: 528 L 530
           L
Sbjct: 757 L 757


>SB_32199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 348 VPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAGYPGVLGNEKIDINTFVEWEIDY 527
           +PD  +  N  K I +YI S   +   Y   G      YP  L N     N + +W +D 
Sbjct: 94  IPDGSKANNHRKKITEYIASNNSRQEFYPPLGKFVKYLYPEPLHNSN---NAWQQWNLDV 150

Query: 528 L 530
           L
Sbjct: 151 L 151


>SB_47948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 409 KA*SSACTKIMETSHVPVTPGCLETKKSISTHLSNG 516
           KA  S  TK  E++H+P       T K I  HLSNG
Sbjct: 511 KAGGSRGTKDEESAHLPFLRSWFRTSKGIILHLSNG 546


>SB_43932| Best HMM Match : Baculo_44 (HMM E-Value=9.7)
          Length = 240

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 33  LKIKFTERVRSKIKMIRLILVFLTISHSYALNNGLAMTPPM 155
           +K+K+ E  R +IKM  LI+VFL +     L     +TP +
Sbjct: 12  VKLKYEENRRYRIKMRGLIIVFLVVELLGGLGEPCKLTPKL 52


>SB_21191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +3

Query: 57  VRSKIKMIRLILVFLTISHSYALNNGLAMTPPMGWL---TWERF 179
           +RS+ K  + I V +T SH+   +NG+ +  P+G +   +WE++
Sbjct: 49  IRSRAKEGQAIGVVITASHNPIYDNGVKLVDPLGEMLNESWEKY 92


>SB_16685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 33  LKIKFTERVRSKIKMIRLILVFLTISHSYALNNGLAMTPPMGWLTW 170
           + +K  +       +++LIL+F TI    A  NG  +TP + +  W
Sbjct: 136 IALKLLKESSRAADIVKLILLFPTIERMAATPNGRIITPIVNYFKW 181


>SB_12807| Best HMM Match : Extensin_2 (HMM E-Value=0.56)
          Length = 430

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 279 AGYEYLGIDDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYI 401
           A Y +  I +   +  R   G   PD KRFP+G+  +A Y+
Sbjct: 238 AAYPHWPICEYQPDPKRFPSGIPAPDPKRFPSGIPPLAQYV 278



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 351 PDRKRFPNGMKAIADYIHSKGLKFGMYEDY 440
           PD KRFP+G+  +A Y+    +  G    Y
Sbjct: 317 PDPKRFPSGIPPLAQYVSINRIPIGSLAAY 346


>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
 Frame = +3

Query: 516 EIDYLKLDGCYIDPIQMDKG-----YPDFGKLLNATGRSILYSCSWPAYQEEKKILPNYA 680
           EI  +KLD   +  +Q++ G      PD G  +   G+S L  C      + + IL   A
Sbjct: 567 EISTVKLDDSQLVTVQLESGSFIRFQPDTGNAMCKKGKSYLLDCRLVDNNDIRPILGQKA 626

Query: 681 SIAEHCNLWRNYD 719
            +      +RN D
Sbjct: 627 CVRMKILEYRNND 639


>SB_27551| Best HMM Match : rve (HMM E-Value=6.3e-25)
          Length = 291

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
 Frame = +2

Query: 338 RSAGTRQETISKW---------DEGHS*LYPQQRLKVRHVRRLWKPHMCRLPRGAWKRKN 490
           RS G R+  +S W          + +   YP+QRL V  +   W+  +C + +      +
Sbjct: 101 RSKGVRRAQVSSWLRSQPTYILHKPYRRRYPRQRLVVNGMDEQWQADLCNM-QALRSYND 159

Query: 491 RYQHICRMGNRLFEARWMLY*PDTNG*RL 577
            Y ++  + + L +  W++   D  G RL
Sbjct: 160 GYNYLLTVIDVLSKYAWVVPLKDKTGKRL 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,823,206
Number of Sequences: 59808
Number of extensions: 541765
Number of successful extensions: 1347
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)