Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m06
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08380.1 68418.m00987 alpha-galactosidase, putative / melibia...   175   3e-44
At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibia...   174   6e-44
At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibia...   173   1e-43
At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibia...   122   2e-28
At3g26380.1 68416.m03290 glycosyl hydrolase family protein 27 / ...    48   8e-06
At5g27330.1 68418.m03263 expressed protein                             30   1.8  
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d...    28   5.5  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    28   7.2  
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    28   7.2  
At5g60080.1 68418.m07533 protein kinase family protein contains ...    27   9.6  
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    27   9.6  

>At5g08380.1 68418.m00987 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]; contains Pfam profile PF02065:
           Melibiase
          Length = 410

 Score =  175 bits (425), Expect = 3e-44
 Identities = 86/180 (47%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
 Frame = +3

Query: 105 ISHSYALNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAG 284
           I   + L NGL +TPPMGW +W  F C  D          E +IK TAD +V+ G    G
Sbjct: 40  ILRRHLLTNGLGVTPPMGWNSWNHFSCNID----------EKMIKETADALVTTGLSKLG 89

Query: 285 YEYLGIDDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCA-G 461
           Y Y+ IDDCW E +RD KG LVP +  FP+G+KA+ADY+HSKGLK G+Y D G  TC+  
Sbjct: 90  YNYVNIDDCWAEISRDSKGSLVPKKSTFPSGIKAVADYVHSKGLKLGIYSDAGYFTCSKT 149

Query: 462 YPGVLGNEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYS-CSW 638
            PG LG E+ D  TF EW IDYLK D C  D  +    YP   + L  +GR I +S C W
Sbjct: 150 MPGSLGYEEHDAKTFAEWGIDYLKYDNCNSDGSKPTVRYPVMTRALMKSGRPIFHSLCEW 209


>At3g56310.1 68416.m06259 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 437

 Score =  174 bits (423), Expect = 6e-44
 Identities = 85/173 (49%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
 Frame = +3

Query: 123 LNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLGI 302
           LNNGLA TP MGW +W  F C           I+E++IK TAD +VS G  D GY ++ I
Sbjct: 65  LNNGLARTPQMGWNSWNFFACN----------INETVIKETADALVSSGLADLGYIHVNI 114

Query: 303 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAGYPGVLGN 482
           DDCW    RD +G+LVP  + FP+G+K +ADY+HSKGLK G+Y D G  TC  +PG L +
Sbjct: 115 DDCWSNLLRDSEGQLVPHPETFPSGIKLLADYVHSKGLKLGIYSDAGVFTCEVHPGSLFH 174

Query: 483 EKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYS-CSW 638
           E  D + F  W +DYLK D C+   I+  + YP     LNATGRSI YS C W
Sbjct: 175 EVDDADIFASWGVDYLKYDNCFNLGIKPIERYPPMRDALNATGRSIFYSLCEW 227


>At5g08370.1 68418.m00986 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 396

 Score =  173 bits (420), Expect = 1e-43
 Identities = 85/174 (48%), Positives = 108/174 (62%), Gaps = 2/174 (1%)
 Frame = +3

Query: 123 LNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLGI 302
           +NNGLA++P MGW +W  F+C           I+E+LIK+TAD MVS G    GY+Y+ I
Sbjct: 32  MNNGLALSPQMGWNSWNHFQCN----------INETLIKQTADAMVSSGLSAIGYKYINI 81

Query: 303 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCA-GYPGVLG 479
           DDCW E  RD +G LV     FP+G+KA++DY+HSKGLK G+Y D G LTC+   PG LG
Sbjct: 82  DDCWGELKRDSQGSLVAKASTFPSGIKALSDYVHSKGLKLGIYSDAGTLTCSQTMPGSLG 141

Query: 480 NEKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYS-CSW 638
           +E+ D  TF  W IDYLK D C        + YP   K L  +GRSI +S C W
Sbjct: 142 HEEQDAKTFASWGIDYLKYDNCENTGTSPRERYPKMSKALLNSGRSIFFSLCEW 195


>At3g56310.2 68416.m06260 alpha-galactosidase, putative / melibiase,
           putative / alpha-D-galactoside galactohydrolase,
           putative similar to alpha-galactosidase SP:Q42656 from
           [Coffea arabica]
          Length = 413

 Score =  122 bits (294), Expect = 2e-28
 Identities = 73/173 (42%), Positives = 91/173 (52%), Gaps = 1/173 (0%)
 Frame = +3

Query: 123 LNNGLAMTPPMGWLTWERFRCITDCEKYPNECISESLIKRTADLMVSEGYLDAGYEYLGI 302
           LNNGLA TP MGW +W  F C           I+E++IK TAD +VS G  D GY ++ I
Sbjct: 65  LNNGLARTPQMGWNSWNFFACN----------INETVIKETADALVSSGLADLGYIHVNI 114

Query: 303 DDCWLEKTRDDKGRLVPDRKRFPNGMKAIADYIHSKGLKFGMYEDYGNLTCAGYPGVLGN 482
                                   G+K +ADY+HSKGLK G+Y D G  TC  +PG L +
Sbjct: 115 ------------------------GIKLLADYVHSKGLKLGIYSDAGVFTCEVHPGSLFH 150

Query: 483 EKIDINTFVEWEIDYLKLDGCYIDPIQMDKGYPDFGKLLNATGRSILYS-CSW 638
           E  D + F  W +DYLK D C+   I+  + YP     LNATGRSI YS C W
Sbjct: 151 EVDDADIFASWGVDYLKYDNCFNLGIKPIERYPPMRDALNATGRSIFYSLCEW 203


>At3g26380.1 68416.m03290 glycosyl hydrolase family protein 27 /
           alpha-galactosidase family protein / melibiase family
           protein similar to alpha-galactosidase GI:10944326 from
           [Phanerochaete chrysosporium]
          Length = 647

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
 Frame = +3

Query: 33  LKIKFTERVRSKIKMIRLILVFLTISHSYALNNGLAMTPPMGWLTWERFRCITDCEKYPN 212
           L ++ T   RS +  I   L   ++S         A  PP GW +++ F C T       
Sbjct: 4   LSVEKTGSTRSTVFFIIFNLSIFSLSIEARSRQQHASFPPRGWNSYDSF-CWT------- 55

Query: 213 ECISESLIKRTADLMVSEGYLDAGYEYLGIDDCWLEK-------------TRDDKGRLVP 353
             ISE+   ++A++ VS+  L  GY+Y+ +D  W  K               D+ GRL P
Sbjct: 56  --ISEAEFLQSAEI-VSKRLLPHGYQYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRLHP 112

Query: 354 DRKRFPN-----GMKAIADYIHSKGLKFGMY 431
           D  R+P+     G   +A+ +H  GLKFG++
Sbjct: 113 DPGRWPSSRGGKGFTEVAEKVHRMGLKFGIH 143


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 231 LIKRTADLMVSEGYLDAGYEYLGIDDCWLEKTRDDKGRLVPDRKRFPNGM 380
           ++K   DL++  G+++   + +G++  WL K + D+   + D KR  NG+
Sbjct: 109 MLKIEMDLLM--GFVEGRVKEMGVEVDWLFKEKSDRETEIRDLKREANGL 156


>At1g32490.1 68414.m04009 RNA helicase, putative similar to
           ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1044

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = -3

Query: 349 TSRPLSSRVFSNQQSSIPKYSYPASRYPSLTIKSAVLFIRLSLMHSLGYFSQSVIHLKRS 170
           +S  + +  FS+   + P +S+P  RYP        + I  +      Y   +++ +   
Sbjct: 555 SSATMDAEKFSDYFDTAPIFSFPGRRYP--------VEINYTSAPEADYMDAAIVTILTI 606

Query: 169 HVSQPIGGVI 140
           HV +P+G ++
Sbjct: 607 HVREPLGDIL 616


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1225

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
 Frame = -2

Query: 713 IAPKVTVLCY-RCIVWQYLFFLLICWPATGVQDGXXXSVQQFTEVWIAFIHLYRVNITSI 537
           +A     L Y  C  W   F    CW  TG +       +    V    +  + +++TS 
Sbjct: 65  VAKNAVALVYVACASWVICFIEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVTST 124

Query: 536 ELQIIDFPFDKCVDIDFFVSKHP 468
              I     D  V  DF   K P
Sbjct: 125 SDVITSVSSDSLVIQDFLSEKLP 147


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1240

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
 Frame = -2

Query: 713 IAPKVTVLCY-RCIVWQYLFFLLICWPATGVQDGXXXSVQQFTEVWIAFIHLYRVNITSI 537
           I+  V  L Y  C  W   F    CW  TG +       +    V    +  + +++TS 
Sbjct: 77  ISKNVVALLYVACGSWVICFLEGYCWTRTGERQAARMREKYLRAVLRQDVGYFDLHVTST 136

Query: 536 ELQIIDFPFDKCVDIDFFVSKHP 468
              I     D  V  DF   K P
Sbjct: 137 SDVITSISSDSLVIQDFLSEKLP 159


>At5g60080.1 68418.m07533 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 377

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +3

Query: 357 RKRFPNGMKAIADYIHSKGLKFGMYEDYGNLT---CAGYPGVL 476
           R +FP G K  A  IHS G+  G+ E     T    A +P V+
Sbjct: 89  RCKFPEGHKVGAAKIHSNGITDGLSETVAETTTLYAADHPNVI 131


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/78 (23%), Positives = 27/78 (34%)
 Frame = -2

Query: 695 VLCYRCIVWQYLFFLLICWPATGVQDGXXXSVQQFTEVWIAFIHLYRVNITSIELQIIDF 516
           +L   C  W   F    CW  TG +       +    V    +  + +++TS    I   
Sbjct: 1   MLYVACASWVICFLEGYCWTRTGERQAAKMRERYLRAVLRQDVGYFDLHVTSTSDIITSV 60

Query: 515 PFDKCVDIDFFVSKHPGV 462
             D  V  DF   K P +
Sbjct: 61  SSDSLVIQDFLSEKLPNI 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,408
Number of Sequences: 28952
Number of extensions: 379542
Number of successful extensions: 917
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)