Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m05
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    33   0.041
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    33   0.041
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    28   1.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    27   2.7  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   3.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.7  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   6.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.1  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   8.1  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    25   8.1  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +1

Query: 361 IKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMS 540
           ++N +DL  +    L I  +G   K+  LET  +E+L K E L E + +       +  +
Sbjct: 564 LRNELDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEELSSTRKLLTKNEAA 623

Query: 541 ANIQSSN 561
              Q SN
Sbjct: 624 VAEQQSN 630


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 18/67 (26%), Positives = 38/67 (56%)
 Frame = +1

Query: 388 EDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNAS 567
           E ++ + ++ K  ++ +  L+  +D  LN++EIL ER+ T+  Q K ++ +AN + S+  
Sbjct: 234 EAQLEMYMSGKSEDDLLFSLQQERDYALNQVEILQERVDTLMKQ-KANSSTANEKLSHME 292

Query: 568 KVESVIT 588
                +T
Sbjct: 293 SSSPTLT 299


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +1

Query: 304 MKRIVDHDDKIELPKCMYHIKNPIDL---TEEDEICLKINEK-GPNNKMTELETRQDELL 471
           +K  V+++ KI   K +   K  +DL   +E+D+  L+   K G +        R ++++
Sbjct: 170 LKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNGVDMIFASFIRRAEDVI 229

Query: 472 NKLEILYERIKTISSQCKLDN 534
           +  E+L E  K I   CK++N
Sbjct: 230 HIREVLGEEGKNIKIICKIEN 250


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 332  LSSWSTILFIT-YIIIYQPYPRCYSVFFFVLM 240
            LS+W+ +L +  Y +  + YPR YS+  F+++
Sbjct: 3228 LSNWNNLLKLEEYKLSERVYPRLYSILQFIIL 3259


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = -1

Query: 419 FSLIFKQISSSSVRSIGF-----LMWYI--HFGN-SILSSWSTILFITYIIIYQPYPR 270
           FS IF ++  S +  + F     L+W +   FG   +LSSW   LF++ + +  P P+
Sbjct: 550 FSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGVLSSWLKSLFLSLLDLVIPNPK 607


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 621 IRTQHQDNFLWCNYRFDF*GI*GLNISTHIVKLTLRANCL 502
           ++ +HQDN LW  ++F    I  L++S  +V++  R N L
Sbjct: 122 LKEEHQDNCLWRLHKFP-PDIYHLSVSAELVQVGRRFNSL 160


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 639 EYHFEKIQFTNTYNLSCPF 695
           EY +    FTN YN SC +
Sbjct: 215 EYRYVDFNFTNVYNTSCEY 233


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 553 SSNASKVESVITPEEVVLVLSPDSLPWYLNI 645
           S++   + S+ITP E   +   D + WY++I
Sbjct: 410 SASKQPLHSLITPPEQEFIQKLDQIGWYISI 440


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +1

Query: 460 DELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYL 639
           D + N+L    +R +   SQ K     AN+   N++ +E  I  +E +L  +PD L  + 
Sbjct: 32  DMITNELRNAIQRQRE-GSQSK--PQGANVDRVNSTNLEKDIDLQESLLTNNPDLLQTFK 88

Query: 640 NIILK 654
             ++K
Sbjct: 89  EAVMK 93


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 375 DRIFNVVHTFRQLYFIIVVNDPLHNI 298
           D IF+  + FRQL  I+  ND LH +
Sbjct: 369 DFIFHEGNHFRQLKLILEANDILHQL 394


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 355 YHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNK 477
           Y     I+  +E+E+  K +     NK+T L  RQ ++ N+
Sbjct: 469 YDSDQEIEDADEEEVLEKASRIREKNKLTMLAARQKKIKNR 509


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 417 FIDFQTNFIFFCKIDRIFNVVHTFRQL 337
           FID+ +   FFCK+  IF +   F  L
Sbjct: 84  FIDYSSLITFFCKLCVIFGLGFVFTYL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,625
Number of Sequences: 5004
Number of extensions: 59816
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)