Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10m05
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0143 - 944169-947273 30 1.6
07_03_1248 - 25165929-25166891,25169159-25169473 29 2.8
03_03_0012 + 13737898-13740031,13740347-13740486 29 2.8
10_03_0044 + 7328777-7328923,7329048-7329074 29 4.8
10_08_0002 - 13986969-13989338 28 6.4
08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622... 28 6.4
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 28 6.4
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 28 6.4
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 28 8.5
03_01_0250 - 1937650-1939071,1939375-1939468,1939665-1939870,193... 28 8.5
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408... 28 8.5
>05_01_0143 - 944169-947273
Length = 1034
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 364 KNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISS 516
K + LTE I N K K+TE+ET+ E LN++ + +++ +S
Sbjct: 647 KEKVLLTEYTSILR--NYKNEKRKLTEVETKNQERLNEMSAMISELRSANS 695
>07_03_1248 - 25165929-25166891,25169159-25169473
Length = 425
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 457 QDELLNKLEILYERIKTISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWY 636
+D LLNK I R++ Q + N SNA+ ++ + SLP Y
Sbjct: 135 EDMLLNKKHIFVPRVEPTPHQIEETEDDYNDDGSNANVASPNSNYDQD--LFGSISLPHY 192
Query: 637 LNIILKKSNLPIHTTCHVHSSV 702
+++L +++L +H H +
Sbjct: 193 QDMLLNQNHLSVHRVEPAHDQL 214
>03_03_0012 + 13737898-13740031,13740347-13740486
Length = 757
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 508 ISSQCKLDNMSANIQSSNASKVESVITPEEVVLVLSPDSLPWYLNIILKKSNLPI 672
ISS CKL N +++ S + P+ VV ++ Y +++ K +
Sbjct: 508 ISSNCKLQNWPSSLNDDGWSGTSFLFLPDHVVTIMRFHIATCYCELVMHKEGFSV 562
>10_03_0044 + 7328777-7328923,7329048-7329074
Length = 57
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 331 KIELPKCMYHIKNPIDL--TEEDEICLK 408
KI++PKC HI+ PI L + +IC++
Sbjct: 12 KIKMPKCWNHIRTPITLLISNVRQICIR 39
>10_08_0002 - 13986969-13989338
Length = 789
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 435 LIIRTLFIDFQTNFIFFCKIDRIFNVVHTFRQLYFIIVVNDPLHNIHH 292
LI+R+ FID N++ + + ++VV + I V+ND L N+ H
Sbjct: 475 LIVRS-FIDDSVNYLSYDPMMDAYDVVKRYLDKLLIEVLNDGLLNLIH 521
>08_01_0704 +
6219530-6219609,6221595-6222243,6222339-6222437,
6222521-6222616,6222750-6222848,6222929-6223027,
6223811-6223882,6224508-6224597,6225173-6227329
Length = 1146
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 379 LTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISS-QCKLDNMSANIQS 555
LT+++ ++ + + ++ RQ+ + N + R T++ + NMS +QS
Sbjct: 627 LTDQENAVSQL-QSSHTDYFVQIRPRQEYVTNYSQSQLSRAATVNQIETNQRNMSGQLQS 685
Query: 556 SNASKVESVITPEE 597
S A ++ + T +E
Sbjct: 686 SQADSLDQIQTEQE 699
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 424 PNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSA-NIQSSNASKVESVIT 588
P + +L D KLE+L+E +K C LD M A +Q + A ++ + I+
Sbjct: 139 PGKRRVDLYLEHDSQRYKLEVLFEDMKDCLG-CTLDGMGAILLQLNYAPRIHTAIS 193
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 397 ICLKINEKGPNNKMTELETRQDELLNKL 480
ICL + E+GP+ T L+T+ E N++
Sbjct: 774 ICLGLWERGPSRIKTSLQTKMGETANRM 801
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 382 TEEDEI-CLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSS 558
TE++ I CLK + K NNK++EL+ LL E +++ S+ L NM+ S+
Sbjct: 137 TEKNTIKCLKNDIKQLNNKLSELQA----LLEMKETEISQLRRNSTGVDLGNMNVPNTSA 192
Query: 559 NASKVESVITP 591
S +E P
Sbjct: 193 ADSSLEGQDMP 203
>03_01_0250 -
1937650-1939071,1939375-1939468,1939665-1939870,
1939986-1940132
Length = 622
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +1
Query: 334 IELPKCMYHIKNPIDLTEEDEICLKIN 414
+E +CM+H+K P+ ++CL ++
Sbjct: 197 MESQRCMHHVKEPVFFPSLQKLCLTVD 223
>02_01_0554 +
4083020-4083854,4083877-4083906,4084843-4084911,
4085170-4085445,4085601-4085720,4086037-4086044
Length = 445
Score = 27.9 bits (59), Expect = 8.5
Identities = 25/85 (29%), Positives = 41/85 (48%)
Frame = +1
Query: 388 EDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMSANIQSSNAS 567
+DE+C E G NN+ + +T EL NKL+ + I + + +N + N+ S+ S
Sbjct: 310 KDEVC----ETGANNEGKKSQTDACELANKLQENAQHIHMLLKEEAGENENHNLAISSDS 365
Query: 568 KVESVITPEEVVLVLSPDSLPWYLN 642
+ +E L+ S L YLN
Sbjct: 366 METTRQKGDE--LIKSLGGLVSYLN 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,299
Number of Sequences: 37544
Number of extensions: 306744
Number of successful extensions: 644
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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