Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m05
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_8122| Best HMM Match : DUF573 (HMM E-Value=6.3)                     33   0.30 
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)                   31   1.2  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)               31   1.2  
SB_5413| Best HMM Match : IalB (HMM E-Value=4.5)                       30   1.6  
SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.6  
SB_10017| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.7e-15)       28   8.6  

>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 24/73 (32%), Positives = 43/73 (58%)
 Frame = +1

Query: 295 MYVMKRIVDHDDKIELPKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLN 474
           MY +    ++ +  +LP CMY +K+    + ED+I  ++N  G +N +  LE RQD++LN
Sbjct: 9   MYKLPEFYNNKEPPQLPNCMYKMKSYHTYSPEDKI--QVNGSGGDN-LHSLERRQDDILN 65

Query: 475 KLEILYERIKTIS 513
            LE L + +  ++
Sbjct: 66  DLENLRKEVDQLA 78


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +1

Query: 433  KMTELETRQDELLNKLEILYERIKTISSQCK--LDNMSANIQSSNASKVESVITPEEVVL 606
            K++E E  +  LL K+E L    + +  QCK    N+    + + A K E V T ++V L
Sbjct: 2819 KLSESEKERSPLLEKIEALENENRDLVKQCKELSRNLLERRRETEAVKKEMVATEKKVKL 2878

Query: 607  VLSPDSLPWYLNIILKKS 660
             L   +L     ++L+K+
Sbjct: 2879 FLEKQNLLEEKLLLLQKT 2896


>SB_8122| Best HMM Match : DUF573 (HMM E-Value=6.3)
          Length = 579

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 301 VMKRIVDHDDKIEL-PKCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNK 477
           + ++ VD+ +K +L      H      +T+ DE    +      +++    T  + L+N 
Sbjct: 145 ITRKFVDYAEKAKLRASAQAHFSLQDVITDPDEFQELLTNLSVPDQLAS--TLMNSLING 202

Query: 478 LEILYERIKTISSQCKLDNMSANIQSSNASK 570
            E  Y++  T  S CK D +S  I  SN +K
Sbjct: 203 TEKQYQQRSTTGSSCKKDELSILIFHSNNTK 233


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +1

Query: 346 KCMYHIKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCK 525
           K +  +K  ++   ED   L+   +   N++TELE R  EL  +  +L +++KT+ ++  
Sbjct: 394 KVVSELKIKLERFSEDGTELEEKIRSQRNRITELERRVKELEKEKNLLEQQVKTMKNKSD 453

Query: 526 LDN 534
            D+
Sbjct: 454 DDD 456


>SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +1

Query: 364 KNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERI-KTISSQCKLDNMS 540
           K+ +  T E+    K + K   +K+ E+E ++DEL   ++ L +++ KT      L    
Sbjct: 403 KDELKTTCEELTSAKADSKAKQHKIHEMEKKRDELQVLVQCLTDKLEKTRDELVTLKEKE 462

Query: 541 ANIQSSNASKVESVITPEEV 600
               SS   K  ++IT +E+
Sbjct: 463 QQTTSSCKEKEVTLITKKEI 482


>SB_53828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = +1

Query: 388 EDEICLKINEK-GPNNKMTELETRQDELLNKLEILYERIKTISSQCK------LDNMSAN 546
           +  +C  + EK     ++  LET + EL N+L +L +  +T+ +Q K            +
Sbjct: 338 QGRVCSLVEEKTNLTKRIKSLETSKAELENRLSVLEKEHETVQNQRKQPIQRAAPKQEQH 397

Query: 547 IQSSNASK-VESVITPEEVVLVLSPDSLPWYLN 642
            Q+ NAS  V+    P+E   V   DS   Y+N
Sbjct: 398 QQNPNASTLVQQQQEPKEYDFVFMCDSNRRYIN 430


>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
          Length = 412

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
 Frame = +1

Query: 301 VMKRIVDHDDKIELPKCMYHIKNPIDLTEE---DEICLKINEKGPNNKMTELETRQDELL 471
           V+++I D   ++E  K +  I+N +   EE   DE  +KI  +   + +T+LET    + 
Sbjct: 53  VLQKICDTLKRVE--KRVRVIENSVACLEELRKDENNMKIECEKFKDGLTDLETGVGSIE 110

Query: 472 NKLEILYERIKTISSQCKLDNMSANIQS-SNASKVESVI---TPEE 597
             +  + ER++T++++   D +   ++   N S+  +VI    PEE
Sbjct: 111 EDVAEITERLETVATRETTDQLLTRVEGLENRSRRNNVIIHNVPEE 156


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
 Frame = +1

Query: 361 IKNPIDLTEEDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKLDNMS 540
           +K+   L +EDE   K NE        +    ++E+ ++L+   + +KT +  CK +N  
Sbjct: 215 LKSVSYLIDEDEE--KENEAKALFGPMQAPKEREEIKSELD---KNLKTHAIACKTNNEL 269

Query: 541 ANIQSSNASKVESVITPEEVVL--VLSPDSLPW 633
                S+ + +E ++ P+EV+L  + SP+ + W
Sbjct: 270 MRAYKSHLANLELLVGPQEVLLASLPSPNIIDW 302


>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
          Length = 495

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +1

Query: 358 HIKNPIDLTE---EDEICLKINEKGPNNKMTELETRQDELLNKLEILYERIKTISSQ-CK 525
           H+K    L E   EDE   ++ +     KM +L  ++DE+L K+E   ER K    +  +
Sbjct: 225 HVKEDQSLKEVAKEDEPLNQVTKDEFVTKMEKLRAKKDEMLKKIEEFEEREKAAMKKIAR 284

Query: 526 LDNMSANIQSSNAS 567
           L+ + A  ++ +A+
Sbjct: 285 LEEVIAKDKNESAT 298


>SB_5413| Best HMM Match : IalB (HMM E-Value=4.5)
          Length = 268

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 385 EEDEICLKINEKGPNNKMTELETRQDELL-NKLEILYERIKTISSQ 519
           +ED +C  IN  G N+K+ E+  RQD+LL   +E + +RI  +  +
Sbjct: 29  KEDILCQFIN--GLNSKLREILVRQDDLLKTPIETVIKRIANLEEE 72


>SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
 Frame = +1

Query: 340 LPKCMYHIKNPIDLTEEDE-ICLKINEKGPNNKMTELETRQD----ELLNKLEILYERIK 504
           LP+  YH     +L++ +  +CL + ++G  N M ++ + +D    + +NKL+I    + 
Sbjct: 100 LPRTFYHPSQAKELSKRERGVCL-VADEGLKNPMEKVNSPEDLKFLDGVNKLKI--HEVP 156

Query: 505 TISSQCKLDNMSANIQSS--NASKVESVITPEEVV 603
           T  +    D+ S+    S  +  +  SV TP+ V+
Sbjct: 157 TRENGLPADSSSSQFNESWPSTDRTLSVGTPQSVI 191


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 508  ISSQCKLDNMSANIQSSNASKVESVITPEEV-VLVLSPDSLPWYLNIILKKSNLPIHTTC 684
            ISSQC      A++Q    + +  V+T +   V  +S      Y  I LK    PI+  C
Sbjct: 1780 ISSQCGTRLSRAHVQFYYQACLRDVMTAQNTDVAFISTTVYAEYCRIALKLPTSPINNLC 1839

Query: 685  H 687
            H
Sbjct: 1840 H 1840


>SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 24  DLDTDKTLITCKSIKIYFHSYK*YSLITATSKYN*ITWYAAIFYFHGTIT 173
           DLD D  +   + + I    YK    IT  S+Y   T  A   Y+H T+T
Sbjct: 100 DLDGDGCITKQEMLHIVDSIYKMVGTITTRSRYYHDTVTAWSLYYHDTVT 149


>SB_540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 412 NEKGPNNKMTELETRQDELLNKLEILYERIKTISSQCKL 528
           ++ G ++  TELE R+  LL +LE+   R K   + CKL
Sbjct: 153 SDSGSSDSETELENRRRALLKELEVANARSK---ASCKL 188


>SB_10017| Best HMM Match : Peptidase_M10_N (HMM E-Value=1.7e-15)
          Length = 152

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 659 DFFKMIFKYQGNESGLSTKTTSSGVITD 576
           D F++  K+  +ESGLS +   SG   D
Sbjct: 121 DIFRLALKFWADESGLSFRQVKSGTAAD 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,883,866
Number of Sequences: 59808
Number of extensions: 388604
Number of successful extensions: 911
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)