Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m05
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 129 ITWYAAIFYFHGTITNVSYYIF*YSITIFL*FDVSEAHQYEKK 257
           + W A +  + GT  NV+  I   S+TI L   V+ A  +  K
Sbjct: 859 VIWLAFVPLYFGTGNNVALRITSMSVTISLSASVTIACLFSPK 901


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 634 YLNIILKKSNLPIHTTCHVHS 696
           Y+  +++K +L IH TC VH+
Sbjct: 314 YITPLIQK-HLKIHDTCGVHN 333


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 178 CLIIFFNIQSPYFYDLMCQKPINTKKKT 261
           CL  F    +P  Y+LM  K  N  K+T
Sbjct: 315 CLYYFSTTINPILYNLMSIKYRNAFKQT 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,947
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)