Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m04
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            35   0.043
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            30   1.2  
SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)               29   2.8  
SB_36310| Best HMM Match : DEAD (HMM E-Value=1.4)                      29   2.8  
SB_14659| Best HMM Match : TBCC (HMM E-Value=7.1)                      28   5.0  
SB_22758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   6.6  
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 212 TQCTTVSNRPAYGISHRG 265
           TQCT V NRP YG+ HRG
Sbjct: 149 TQCTEVENRPTYGLLHRG 166


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 397 MFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 519
           +F+P   + T V  P A  PP +  P++  P P  + P  P
Sbjct: 501 VFAPSSGVPTTVTAPPAAPPPSVFAPSSGVPTPVTEPPPAP 541


>SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 501 LIRSRSWRIRTLHFRRVTGTR--RSHYRGQRLLGAKHSV 391
           L+  R   +R L F  V   R  R+H+RG+  LG KHS+
Sbjct: 323 LLPQRGGDVRILAFHGVHAVRDKRNHWRGEGTLGYKHSM 361


>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
          Length = 167

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 516 SQWTILIRSRSWRIRTLHFRRVTGTRRSHYRGQRLLGAKHSV 391
           + + +++RSRS R R +HF R+   R      +  L A  SV
Sbjct: 2   TNYAVIVRSRSIRTRRIHFHRLINARYFQSNDKVFLDAFSSV 43


>SB_36310| Best HMM Match : DEAD (HMM E-Value=1.4)
          Length = 1042

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 433  RPPGAC-DPPKMQCPNTPAPAPDKDCPLRP 519
            RPP +  DPP +  P  P P   +DC LRP
Sbjct: 1008 RPPDSPRDPPPITPPPPPVPWFPRDCRLRP 1037


>SB_14659| Best HMM Match : TBCC (HMM E-Value=7.1)
          Length = 96

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 516 SQWTILIRSRSWRIRTLHFRRVTGTR 439
           + + +++RSRS R R +HF R+   R
Sbjct: 2   TNYAVIVRSRSIRTRRIHFHRLINAR 27


>SB_22758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -2

Query: 452 SQAPGGLTIVVSVFSGLNIPYEYATPNVPDNNKATSFVCSDFDLCVNPFRTSILSWIILS 273
           S AP  ++ + SV     IP+  A+ NVP  +K T+   S  +    PF  S  S  + +
Sbjct: 241 SAAPTSVSKLESVVQS-RIPFTSASTNVPLGSKGTTLATSSCNFPQQPFSKSWGSSQVSA 299

Query: 272 KYFLGVRCHRR 240
            +    R H +
Sbjct: 300 THISKERLHAK 310


>SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 403 SPEKTLTTIVRPP--GACDPPKMQCPNTPAPAPDKDCPLRP 519
           S   TL +  RPP  GA  PP +  P  P P PD D  + P
Sbjct: 186 SSASTLPSWNRPPPSGAPPPPPIGAP--PPPPPDDDVSMTP 224


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 400 TFRTNTPHLMFPIITKRPVSFA 335
           TFR NT H MF I   RP++ +
Sbjct: 612 TFRRNTQHYMFSIYNHRPMTLS 633


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 504 ILIRSRSWRIRTLHFRRVTGTRRSHYRGQRLLGAKHSVRI 385
           +L+ SR   IR L+     G+ +  +RG R +  KH+ RI
Sbjct: 6   VLVVSRKHAIRILNETAGHGSYKKEHRGLRKVSRKHAQRI 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,794,661
Number of Sequences: 59808
Number of extensions: 420546
Number of successful extensions: 1174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)