Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10m04
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24550.1 68416.m03083 protein kinase family protein contains ... 33 0.14
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 31 0.76
At5g65630.1 68418.m08256 DNA-binding bromodomain-containing prot... 29 1.8
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 29 1.8
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 29 3.1
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont... 28 4.1
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 28 4.1
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 28 4.1
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 28 5.4
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 27 7.1
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 27 7.1
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 7.1
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 27 7.1
At5g52750.1 68418.m06547 heavy-metal-associated domain-containin... 27 9.4
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 27 9.4
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 27 9.4
At1g02405.1 68414.m00187 proline-rich family protein contains pr... 27 9.4
At1g02110.1 68414.m00137 proline-rich family protein contains pr... 27 9.4
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 403 SPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCPLRP 519
SP TT PP A PP P++P P+P + P
Sbjct: 17 SPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPP 55
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 392 YEYATPNVPDNNKATSFVCSDFDLCVNPFRTSILSWIILS-KYFLG 258
YE A P V N + F DFD+ +NP ++ I KYFLG
Sbjct: 452 YEVAGPYVSSNPREALFNFRDFDIGINPSGLNVDEAKIYGYKYFLG 497
>At5g65630.1 68418.m08256 DNA-binding bromodomain-containing protein
similar to 5.9 kb fsh membrane protein [Drosophila
melanogaster] GI:157455; contains Pfam profile PF00439:
Bromodomain
Length = 590
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 313 FTQRSKSEQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPA 492
F QR ++ +VA GT ++ + + S + T+ PP +P ++Q P+ P P
Sbjct: 296 FKQRQWNQNPPMVANPRKGTEQISIAKKLDSVKPPQPTL--PPQLVEPSRVQSPSPPPPP 353
Query: 493 P 495
P
Sbjct: 354 P 354
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 136 P*IHSSYPK*TYIEPMTP-NLK*PPPNTMYNGIKPTRLWHLTP 261
P ++SS P TY P + K PPP +YN + P +++ P
Sbjct: 308 PYVYSSPPPPTYYSPSPRVDYKSPPPPYVYNSLPPPYVYNSPP 350
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +1
Query: 334 EQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPP-GACDPPKMQCPNTPAPAP 495
+ V LLL G L V+Y+ P K V+PP PPK P P
Sbjct: 7 QNISFVILLLLGLLAVSYACDCSDPPKPSPHPVKPPKHPAKPPKPPTVKPPTHTP 61
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 430 VRPPGACDPPKMQCPNTPAPAPDKDCPLRP 519
V+PP PP + P P P P+ CP P
Sbjct: 143 VKPP----PPPVVTPPPPTPTPEAPCPPPP 168
>At5g06940.1 68418.m00784 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 872
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Frame = +1
Query: 211 NTMYNGIKPTRLWHLTPRKYFDRMIQDKI--EVRNGFTQRSKSEQTKLVALLLSGT---- 372
N ++G P LW L PR R ++ +V + S EQ ++V SG
Sbjct: 326 NNGFSGEFPVVLWKL-PRIKIIRADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHG 384
Query: 373 LGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPN 477
LG+ S FS + + PP CD P + N
Sbjct: 385 LGLVKSLYKFSASQNRFSGELPPNFCDSPVLSIVN 419
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 361 LSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPA 492
L+G + V S+ +F+P T + P A PP + P P+PA
Sbjct: 176 LTGDIPVNGSFSLFTPISFANTKLTPLPASPPPPIS-PTPPSPA 218
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 428 IVVSVFSGLNIPYEYATPNVPDNNKATSFVCSDFDLCVNPFRTS 297
I +F+GL + Y P DNN+ +C++ V P T+
Sbjct: 26 IAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTT 69
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 406 PEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCP 510
P T PP A P P + AP+P D P
Sbjct: 42 PAATPAPTTTPPPAVSPAPTSSPPSSAPSPSSDAP 76
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 355 LLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAP 495
L+ + +L + S + S E + T+ P + PP TP+P P
Sbjct: 75 LVSAASLFLKPSVSLASEESSSATVTSPAESAAPPPPPATTTPSPPP 121
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +1
Query: 325 SKSEQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKD 504
S+S+ + LLL G + V+Y+ P+ + P PPK P P K
Sbjct: 3 SRSQNLSFLVLLLLGFVAVSYACDCTPPKPSPAPHKPPKHPVKPPKPPAVKPPKPPAVKP 62
Query: 505 CPLRP 519
+P
Sbjct: 63 PTPKP 67
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 436 PPGACDPPKMQCPNTPAPAPDKDCPLRP 519
PP + PP + P+ P+P P L P
Sbjct: 153 PPESLPPPSPESPSPPSPEPPPPSSLEP 180
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 168 LYRTNDAKFKVATTKHNVQRYQTDPPMASHTEE 266
+++ ++ + +V KHN Y + P ASH +E
Sbjct: 7 IFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDE 39
>At5g52750.1 68418.m06547 heavy-metal-associated domain-containing
protein Pfam profile PF00403: Heavy-metal-associated
domain
Length = 139
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 427 IVRPPGACDPPKMQCPNTPAPAPDK 501
+V+PP P+ P PAPAP K
Sbjct: 71 VVKPPEKKPEPEKPAPPKPAPAPAK 95
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 331 SEQTKLVALLLSGTLGVAYSYGMFS 405
+ QT+L+ LL +G+A SYG+FS
Sbjct: 53 ANQTRLLELLHLVFVGIAVSYGLFS 77
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 118 KMIVKSP*---IHSSYPK*TYIEPMTPNLK*PPPNTMYNGIKP 237
K++ KSP ++SS P Y P+ K PPP +YN P
Sbjct: 476 KVVYKSPPPPYVYSSPPPPYYSPSPKPSYKSPPPPYVYNSPPP 518
>At1g02405.1 68414.m00187 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 134
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 406 PEKTLTTIVRPPGACDPPKMQCPNTPAPAPDKDCP 510
P + T PP P K CP +P P P P
Sbjct: 56 PPPSCTPSPPPPSPPPPKKSSCPPSPLPPPPPPPP 90
>At1g02110.1 68414.m00137 proline-rich family protein contains
proline-rich domain, INTERPRO:IPR000694
Length = 679
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = +1
Query: 277 RMIQDKIEVRNGFTQRSKSEQTKLVALLLSGTLGVAYSYGMFSPEKTLTTIVRPPGACDP 456
R+++D + R+ + S+ + + L S A + E T +RP + D
Sbjct: 22 RLMKDAVYARHHLAA-AHSDYCRSLRLTGSALSSFAAGEPLSVSENTPAVFLRPSSSQDA 80
Query: 457 PKMQCPNTPAPAP----DKDCPLRP 519
P++ ++P P P K P RP
Sbjct: 81 PRVPSSHSPEPPPPPIRSKPKPTRP 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,957
Number of Sequences: 28952
Number of extensions: 296883
Number of successful extensions: 1033
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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