Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m03
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    28   5.7  
09_01_0184 + 2693576-2693578,2694157-2694952,2695169-2695249,269...    28   7.6  

>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 656 VGEHAVDQGPRHILERHRPLFALRADVALILHIIVFV 546
           VG+H     P      H   F L AD AL+  I+VFV
Sbjct: 4   VGKHGESSPPSDRRPLHFAAFLLLADAALVALIVVFV 40


>09_01_0184 +
           2693576-2693578,2694157-2694952,2695169-2695249,
           2695454-2695793,2695799-2696258,2696404-2696526,
           2696532-2697266
          Length = 845

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 570 KGHISPQCEQRPMSLKYMSWT 632
           KG  S  C  +P+SLK+ SWT
Sbjct: 812 KGSTSKACATQPVSLKHDSWT 832


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,128
Number of Sequences: 37544
Number of extensions: 357651
Number of successful extensions: 876
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)