Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10m02
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...   156   3e-39
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.88 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   4.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   6.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   8.2  
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score =  156 bits (378), Expect = 3e-39
 Identities = 83/204 (40%), Positives = 122/204 (59%), Gaps = 3/204 (1%)
 Frame = +3

Query: 117 KNSPENEELIENGDAP-NEGRSNIKGDEL-NIAVLLFLYTLQGIPLGLA-GAVPMLLQNK 287
           +N+P +   IEN     N G + +   +  NI  L+ LY +QG+P+GL  G++P  L+  
Sbjct: 21  ENAPASIASIENDTLEANVGSTPLTAKQKRNIYFLILLYLIQGVPMGLVRGSIPYFLK-P 79

Query: 288 GITYTQQAEFSLVNWPFSVKLLWAPIVDAMFWPEFGRRKTWLVPVQYLIGIVMIIVSYCV 467
            ++Y+  A +SL  +P+S+K+LW+PIVD  +   FGRRKTW+VP   LI   +++ SY V
Sbjct: 80  NVSYSDLATYSLAAYPYSLKVLWSPIVDTYYCRSFGRRKTWVVPCMLLISSTLLLFSYNV 139

Query: 468 TDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHASTCNTVGQTA 647
             W+   G     +  T SFLL+ F+ ATQDIAVDGW+L ML    + +AST  TVG   
Sbjct: 140 DTWIS-KGSSYINSFTTWSFLLV-FVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNT 197

Query: 648 GFFLGYVMFLALESPYFCTKYLRT 719
           GFFL + + L   SP F   ++R+
Sbjct: 198 GFFLSFTILLVFTSPEFANTFIRS 221


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -2

Query: 562 ISCVAAKKFNNRKDTVSIVIEGGSPSIPSQSVTQYDTIIITIPIKYWTGTSQVFLLPNSG 383
           I+ +A  K  N K     V++  +      S  ++DT+I T+ +KY T  +    L   G
Sbjct: 46  INIIALSKKINSKGFTVYVLDATTRRSALLS-GKHDTMIFTLFVKYITSLNHPEYLLLGG 104

Query: 382 QNIASTIGAHNSFTL 338
            +  + I  H S TL
Sbjct: 105 YSYGARISMHKSITL 119


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = -2

Query: 595 FNIVKAQPSTAISCVAAKKFNNRKDTVSIVIE-GGSPSIPSQSVTQYDTIIITIPIKYWT 419
           FN ++  PST +   +  K  NR  T+S  ++ G   +  S S T   + +I     Y +
Sbjct: 134 FNTIRLIPSTNVINTSHYKGFNRYPTISSTVKVGKRAATASFSYTNVSSSVIA--TAYTS 191

Query: 418 GTSQVFLLPNSGQNIASTIGAHNSFT 341
            +S +   P+  Q+  S I    S T
Sbjct: 192 ASSTILSSPSVEQSTPSIITQTESST 217


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 339 SVKLLWAPIVDAMFWPEFGRR 401
           S+KL W   +D MF  +FG+R
Sbjct: 695 SIKLRWENRIDQMFTKKFGKR 715


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 438 IVMIIVSYCVTDWLGIDGEPPSMTILTVSFLLLNFLA 548
           ++ I+  +C+ DW   D +PPS+    ++ L+L FL+
Sbjct: 575 VITIVYKWCI-DWKAKDLQPPSL----LNMLILMFLS 606


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 110 C*SHNCCSYSLKYITNVLKCQC*KNTSVEFT 18
           C S+ C S S         C+C +N+S+EFT
Sbjct: 403 CYSYICRSRSCPSKYQCYSCRCARNSSLEFT 433


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 694 YGDSRARNITYPKKNPAVWPTVLHV 620
           Y  S   N+ YP + P V P VLH+
Sbjct: 112 YAVSLIANVDYPDEWPEVVPAVLHL 136


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 375 MFWPEFGRRKTWLVPVQY 428
           M WP F     WL+P+QY
Sbjct: 154 MVWPFFQTVNFWLMPLQY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,252
Number of Sequences: 5004
Number of extensions: 67190
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)