Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10m02
(719 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.) 164 7e-41
SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56) 39 0.005
SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5) 30 1.6
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 29 2.9
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_56122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16) 28 8.8
SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25) 28 8.8
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.8
>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 164 bits (398), Expect = 7e-41
Identities = 104/205 (50%), Positives = 129/205 (62%), Gaps = 5/205 (2%)
Frame = +3
Query: 120 NSPENEELIE-NG--DAPNEGRSNI--KGDELNIAVLLFLYTLQGIPLGLAGAVPMLLQN 284
N+ E + E NG P E R + D +I VLLFLY LQGIPLGLAG++P+LL
Sbjct: 27 NNTRQEVMTEVNGKQQKPKEHRKPLIPPDDRWSIGVLLFLYVLQGIPLGLAGSIPLLLAK 86
Query: 285 KGITYTQQAEFSLVNWPFSVKLLWAPIVDAMFWPEFGRRKTWLVPVQYLIGIVMIIVSYC 464
K + Y QQA FS V WP+SVKLLWAPIVDA F+ FGRRKTWLVPVQYLIGI M+I+S
Sbjct: 87 K-VGYKQQAMFSFVYWPYSVKLLWAPIVDAAFFSRFGRRKTWLVPVQYLIGIFMLILS-- 143
Query: 465 VTDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHASTCNTVGQT 644
+ + +DG ++T+L + +++ GW ASTCNTVGQT
Sbjct: 144 --NDIAVDGW--ALTML-----------SRENV---GW------------ASTCNTVGQT 173
Query: 645 AGFFLGYVMFLALESPYFCTKYLRT 719
AG+FLG V+FLAL S F KYLR+
Sbjct: 174 AGYFLGNVVFLALSSSEFSNKYLRS 198
>SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)
Length = 400
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 459 YCVTDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHASTCNTVG 638
+ V +LG+D + +++ + L LN +AA QDIAVD A+ +LK +G + VG
Sbjct: 5 FVVPAFLGVD----NTSVVVGAVLGLNAMAALQDIAVDAMAIKVLKSSELGLGNIAQVVG 60
Query: 639 QTAGFFLG 662
G G
Sbjct: 61 YKLGALAG 68
>SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5)
Length = 404
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 671 HYISQKKPSCLAYCITCR 618
++I+Q P CL YC TCR
Sbjct: 111 NWINQPDPRCLGYCFTCR 128
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 84 IRAAIMTLTKRKNSPENEELIENGDAPNEGRSNIKGDE 197
I AI +TKRK + E +EL+ A +E +++ KG++
Sbjct: 2966 IDEAIEIVTKRKENDEIQELLRPSSARSESKASKKGEK 3003
>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 618 STCNTVGQTAGFFLGYVMF---LALESPYFCTKYLRT 719
+TCN G+T+G FL LAL + Y CT+ +T
Sbjct: 488 ATCNNDGETSGNFLNVAAMSARLALGAQYECTQSFQT 524
>SB_56122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = -2
Query: 715 RKYLVQKYGDSRARNITYPKKNPAVWPTVLHVEACPTLHLFNIVKAQPSTAISCVAAKKF 536
RK +Q YG R R +T K++P PT+ H V + PST C + K
Sbjct: 14 RKISLQNYGAFRVRPLTISKEDPKRPPTLTKSSLSRDSH----VISPPSTRNYCSSHTK- 68
Query: 535 NNRKDTVSIVIEGGSPSIPSQSVTQYDTIII 443
++ ++ PS ++ +T Y+T I+
Sbjct: 69 SSLSPNKGYSLD--LPSFYNRLITGYNTTIV 97
>SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16)
Length = 217
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 549 ATQDIAVDGWALTMLK---RCNVGHASTCNTVGQTAGF 653
A+ I+ G+ + ML RC CNTVG TAGF
Sbjct: 29 ASTSISYAGYTVNMLDIAPRCAGVIMGICNTVGTTAGF 66
>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
Length = 1137
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/85 (29%), Positives = 35/85 (41%)
Frame = +3
Query: 459 YCVTDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHASTCNTVG 638
Y +T LG G L + L T I G A + + C VGH + C+TV
Sbjct: 643 YTITLCLGGHGSARRTITLCIGGHLSARHTITLCIGGHGSARSTITLCIVGHGNACHTVT 702
Query: 639 QTAGFFLGYVMFLALESPYFCTKYL 713
G Y FL+ S + +KY+
Sbjct: 703 LCIGGHGKYQAFLS--SFLWASKYV 725
>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1075
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 586 VKAQPSTAISCVAAKKFNNRKDTVSIV--IEGGSPSIPSQSVTQYD 455
+K S AIS +N R + + +V +GGSP++ S+++ D
Sbjct: 511 IKDWSSGAISLAGMLSYNQRNNYIVVVNVTDGGSPALKSRAIVVID 556
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,787,488
Number of Sequences: 59808
Number of extensions: 469702
Number of successful extensions: 1103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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