Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l24
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    28   2.9  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   3.8  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    28   3.8  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    28   3.8  
At2g42370.1 68415.m05243 expressed protein                             27   8.8  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    27   8.8  
At1g01660.1 68414.m00084 U-box domain-containing protein               27   8.8  

>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 233 DEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 382
           DE F K  KE L N KG   K   F  EQ+K+ E      +E ++ +E P
Sbjct: 183 DEQFAKAVKESLKN-KG---KGKQFEDEQVKKDEQLALIVQESLNMVESP 228


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 248 KKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 379
           K +   L  +K  L +E+A H  Q    ++ IRR K+++  + K
Sbjct: 516 KCEISSLKEIKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNK 559


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 248 KKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDI 373
           ++++  +A LK  +++     QE++KR  DA  RH+ +  ++
Sbjct: 371 EERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEV 412


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 212 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRR-HKEQMSDIEKPQ 385
           + E  +E E  Y+K+KE+    K    KEI + +E+ +  +D+ RR H+  + +  + Q
Sbjct: 486 RREREKEKERQYEKEKEKEKERKR--KKEIRYEEEEEEDDDDSRRRWHRAALDERRRRQ 542


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 236 EYFYKKQKE--QLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 382
           E  +KK  E  +L N    +   +A++Q+ +K  + A R+H++    ++KP
Sbjct: 569 EELHKKNVEIYKLENELRMMTSVLAWYQKALKESQKACRKHRKVCPLLDKP 619


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 248 KKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 382
           + ++E+L  L+  L+  +      +K   DAIRR +  +SD  +P
Sbjct: 638 QSEREKLVMLEEVLHHRVIGQDMAVKSVADAIRRSRAGLSDPNRP 682


>At1g01660.1 68414.m00084 U-box domain-containing protein
          Length = 568

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +2

Query: 215 MEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 379
           M+   E+    KK+KE+   +  +L +       Q K  E+ ++R +E++  ++K
Sbjct: 369 MKRQEEELEKTKKEKEEACMISKNLMQLYEDEVRQRKEAEELVKRRREELEKVKK 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,716
Number of Sequences: 28952
Number of extensions: 147086
Number of successful extensions: 398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)