Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l23
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.16 
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    29   0.64 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           29   0.84 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.9  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    27   1.9  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    27   2.6  
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    27   3.4  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   3.4  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    26   5.9  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   5.9  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.8  

>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 198 IEVHDSNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNE 338
           +++H   G    I T E TD +++      +T     L +VPTELNE
Sbjct: 113 LDLHQKEGFEETIVTEEATDAVDLEAKG--TTHGENDLDEVPTELNE 157


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 36  SYKMNNKTYYDEQFFLDKYNSNINNCKKRKH 128
           S K N + Y    FFLD +  ++ NC  RK+
Sbjct: 279 SIKSNFRQYKLSPFFLDTFTGDVTNCPLRKN 309


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 189 KRVIEVHDSNGINNKIKTREITDEINVHNTEACSTETYKQLVDVPTELNE 338
           + ++  H  N + +++  R     + VH+  + +T+TY + V V    NE
Sbjct: 599 RHILNRHLGNNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVMEAYNE 648


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 591  DDYPDICDLYNTRFSWNQSRQCQNLLEDFY 680
            D+Y D  D +N  +S NQ  + +N+L   Y
Sbjct: 920  DEYFDYVDPFNIHYSRNQREEAENILRRRY 949


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 99  LNYIYLRKTVHRNRS---YYSFYKKSLKFIEALI 7
           LNY+YL K + RN S   + S YK+ L  ++ ++
Sbjct: 765 LNYVYLMKALFRNISGGKFDSLYKEILPLLQVML 798


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 27/80 (33%), Positives = 39/80 (48%)
 Frame = -2

Query: 608 YVRIVIGFTFGYPEVISSRIIPMLTFQFIDVLFPSVFRPLFLTTYHYIFK*TLQSSIPGH 429
           Y ++V+G TFGY  V+     P L  +    +  SV  PL+L+T  +I    L  +I  H
Sbjct: 199 YPQVVLGLTFGYGAVMG---WPALAGE--ACMNWSVVAPLYLSTISWI---VLYDTIYAH 250

Query: 428 CFEDKCLTVVINGRATVCRF 369
             +DK   V  N  +T  RF
Sbjct: 251 --QDKRDDVKANIYSTALRF 268


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
 Frame = +3

Query: 84  DKYNSNINNCKKRKHDHRIFEHNSNCKLIDL-------NTNAKRVIEVHDSNGINNKIKT 242
           +K N   +   KRKHD    E   + K+          N   K   E   SNG+  +++ 
Sbjct: 21  EKSNETKDETSKRKHDPAEEESAVSTKVSKSEPLEDKGNAEVKEFKETTKSNGVKPEVEI 80

Query: 243 REITDEINVHNTEAC 287
            E T      NTE C
Sbjct: 81  TESTKIQKESNTEPC 95


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 487 KRGRKTLGNNTSMN*NVSMGIILELMTSGYPKVKPMTIRTYVI---CTIHDLVGTNQDNA 657
           K G+  LG  +++    S    L L+ +  P ++   +  Y +   C++H   G N D  
Sbjct: 33  KSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLG 92

Query: 658 RICLKIF 678
             C K+F
Sbjct: 93  TACGKLF 99


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +3

Query: 177 NTNAKRVIEVHDSNGINNK---IKTRE-ITDEINVHNTEACSTETYKQLVDVPTELNEYL 344
           NTN  + + + D  G+NN    I  RE    + ++ +T   + +TY Q  +   E + Y 
Sbjct: 35  NTNTAKSVAILDGVGVNNTFGVISYREKFPMDYHIWHTAPSTGKTYLQPWNDAVEPSTYY 94

Query: 345 IDIG 356
           ID G
Sbjct: 95  IDEG 98


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +3

Query: 54  KTYYDEQFFLDKYNSNINNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNK 233
           K   +EQ  +D   + +N   K  HD+       N K+ ++    KR+ ++ D N + +K
Sbjct: 151 KKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLLDHNDLLSK 210

Query: 234 IK 239
           ++
Sbjct: 211 LE 212


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 435 RNARLQRLLKNIVVSR--QKERAEDAWKQYINELKCKHGYNSRADDFRVPEGKADDYP 602
           R  R Q ++ N  + +  Q++  ++ W++  ++ K K  YN+R+++    EG  DD P
Sbjct: 34  RRRRSQSMIANKRIHQAFQEDEGDEDWEEEEHKPKAKRRYNTRSNE-SFSEG--DDEP 88


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 249 ITDEINVHNTEACSTETYKQLVDVPTELNEYLIDIGKCAEKSTY 380
           +TD++N+   E C      Q++ +P+ L+ +L  + K  E  +Y
Sbjct: 347 LTDKMNLTLDELCRIIQNPQIIQIPSTLSFFLEILTKLLEIYSY 390


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 309 LVDVPTELNEYLIDI-GKCAEKSTYCRPAIDYYSQAF 416
           L  VPT  +  L+ + G    ++    PAI+YYS+AF
Sbjct: 832 LATVPTSYDPVLVLLYGHIMARNRSWIPAINYYSRAF 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,378
Number of Sequences: 5004
Number of extensions: 55632
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)