Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l23
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ...    35   0.059
At4g16650.1 68417.m02516 expressed protein contains Pfam PF03138...    31   0.96 
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta...    31   0.96 
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    29   2.9  
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-...    29   3.9  
At2g10440.1 68415.m01097 hypothetical protein                          28   5.1  
At3g61360.1 68416.m06866 pentatricopeptide (PPR) repeat-containi...    28   6.8  

>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
           (RRS1) family protein contains Pfam profile PF04939:
           Ribosome biogenesis regulatory protein (RRS1); similar
           to Ribosome biogenesis regulatory protein homolog
           (Swiss-Prot:Q15050) [Homo sapiens]
          Length = 318

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 459 LKNIVVSRQKERAEDAWKQYINELKCKHGYNSRADDFRVP--EGKADDYPDI 608
           LK  +  R+KE+    W +  N+ K +HGY+   DD  VP  E K  D P +
Sbjct: 99  LKKGIQKRKKEKV--VWDEQTNQFKRRHGYDRVNDDNDVPIIEAKESDEPGV 148


>At4g16650.1 68417.m02516 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator like protein'  based on similarity to
           axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 549

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 489 ERAEDAWKQYINELK-CKHGYNSRADDFRVPEGKADDYPDICDLYNTRFSWNQS 647
           +R +  W+ +  ++K C+ G+    D+F+   G+  +YP  C +    FS++++
Sbjct: 460 DREKMEWQTFAKKVKSCQRGFMGDPDEFKPGRGEFHEYPQSC-ICQRPFSYDKT 512


>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI5 DnaJ
           homolog subfamily B member 10 Mus musculus ; contains
           Pfam profile PF00226 DnaJ domain
          Length = 347

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
 Frame = +3

Query: 288 STETYKQLVDVPTELNEYLIDIGKCAEKSTYCRPAIDYYSQAFVFKTMSRNAR-----LQ 452
           S+E  + ++  P+++++YL ++GK  +K     P I + S+    +  S + R      Q
Sbjct: 2   SSEIRRNIITKPSKISDYLFNVGKFVKKRPNKGPTISHLSKTKNSENCSSSVRRRENVFQ 61

Query: 453 RLLKNIVVSRQKERAEDAWKQYINELK 533
           R ++ +   ++K ++   +K    E K
Sbjct: 62  RRIEAVEEEKKKSKSNLIFKVVKKEEK 88


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 150 NSNCKLIDLNTNAKRVIEVHDSNGINNKIKTR-EITDEINVH---NTEACSTE 296
           +S  KL D    A      HD+  I++  +T  E  D+INV    NTEACSTE
Sbjct: 495 DSKVKLTDSGPEAS----THDTEKISSFCETLIEAKDDINVKHGINTEACSTE 543


>At5g53170.1 68418.m06610 FtsH protease, putative similar to
           ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
           musculus]
          Length = 806

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -3

Query: 571 LKSSALELYPCLHFNSLMYCFQASSALSF*RLTTIFLSRR 452
           L +S+ +LYPCL F+S    F   S  SF RL+++  + R
Sbjct: 16  LHTSSFKLYPCL-FSSSSLSFCPQSLSSFYRLSSVLHNSR 54


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +3

Query: 51  NKTYYDEQFFLDKYNSN---INNCKKRKHDHRIFEHNSNCKLIDLNTNAKRVIEVHDSNG 221
           +KT   +Q+      SN   I   K   ++   F     C +    T++ + +E   S  
Sbjct: 74  DKTTTSQQWLQQNTQSNLCVICFAKSGPYNRSRFSKTDTCSVTAAATSSAKFVETTYSTA 133

Query: 222 INN-KIKTREITDEINVHNTEACSTETYKQLVDVPTEL 332
            ++ K+    ITD+ +V +T     +  +QL++  T L
Sbjct: 134 FSSIKLTKHSITDQKSVFDTTEQKRQEQEQLINQLTNL 171


>At3g61360.1 68416.m06866 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 498

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 111 CKKRKHDH--RIFEHNSNCKLIDLNTNAKRVIEVHDSNGINNKIKTREITDEIN 266
           CKKR      R+FE        D+       + +H S    NKIK R++ DEI+
Sbjct: 256 CKKRNFGEALRLFEDMDRLDF-DITVQILTTL-IHGSGVARNKIKARQLFDEIS 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,641,489
Number of Sequences: 28952
Number of extensions: 270045
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)