Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l22
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    29   2.2  
At5g62100.2 68418.m07795 BAG domain-containing protein similar t...    29   3.9  
At5g62100.1 68418.m07794 BAG domain-containing protein similar t...    29   3.9  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    28   5.1  
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    28   6.8  
At1g08280.1 68414.m00914 glycosyl transferase family 29 protein ...    28   6.8  
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format...    27   8.9  
At3g18485.1 68416.m02349 hypothetical protein                          27   8.9  

>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 431 ELCRLRCSVLDSTTETSNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSH 610
           EL  LR  V +   E + + S VS+CQ   M +     +     L   R++   +KN+  
Sbjct: 24  ELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVKHDRSLSDSSSLVRRRRVRKGDKNSIP 83

Query: 611 KEITIMSYV 637
             +    YV
Sbjct: 84  SHLISKRYV 92


>At5g62100.2 68418.m07795 BAG domain-containing protein similar to
           BAG domain containing proteins (At5g07220, At5g52060)
          Length = 285

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 479 SNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHKEITIMSYVYTDSFNG 658
           S MF D+S  +     I   +P+  EK+L  LRKI    K  S K I+ +S+   +   G
Sbjct: 89  SKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKI--ATKEKSSKAISDISF-QVERLAG 145

Query: 659 QAS 667
           Q S
Sbjct: 146 QLS 148


>At5g62100.1 68418.m07794 BAG domain-containing protein similar to
           BAG domain containing proteins (At5g07220, At5g52060)
          Length = 296

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 479 SNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHKEITIMSYVYTDSFNG 658
           S MF D+S  +     I   +P+  EK+L  LRKI    K  S K I+ +S+   +   G
Sbjct: 89  SKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKI--ATKEKSSKAISDISF-QVERLAG 145

Query: 659 QAS 667
           Q S
Sbjct: 146 QLS 148


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 1338

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 320 VSQKIHANNELKDVKK--VVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNM 487
           +S K   N + K  +K    NT+    +R+E+  L +  +L +++  V+D  TE SN+
Sbjct: 782 LSDKQERNRKRKRTQKKQTDNTVLDTEDRSESLPLGSLKDLSKVKRRVIDPPTEGSNL 839


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
            identical to cDNA CIP4.1 mRNA for COP1-interacting
            protein 4.1,  GI:13160649
          Length = 976

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +2

Query: 329  KIHANNELKDVKKVVNTITTEINRAEAACLSATDELCRLRCSVLDSTTETSNMFSDVSAC 508
            K++ NN+ K VKK+ N++T   N++        +E    + +  DST   S+  SD  + 
Sbjct: 904  KMNVNNKEKAVKKISNSVTA--NKSTTNFFKDAEE-DESKTTTSDSTKAPSDSSSDNDSD 960

Query: 509  QSYCMHI 529
             +  MH+
Sbjct: 961  VTSSMHM 967


>At1g08280.1 68414.m00914 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 398

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 443 LRCSVL-DSTTETSNMFSDVSACQSYCMHITRSEPMRSEKKLGFLRKIFFPNKNTSHK 613
           L C+V+ +S T  ++ + D+       + +  ++  R EKK+G    I F N N  H+
Sbjct: 175 LSCAVVGNSGTLLNSQYGDLIDKHEIVIRLNNAKTERFEKKVGSKTNISFINSNILHQ 232


>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 272 LATVFVIVLLSYLIPDVSQKIHANNE 349
           L +V  +  L +L+PD  +K+HAN E
Sbjct: 6   LVSVLFLFSLLFLLPDQGRKLHANAE 31


>At3g18485.1 68416.m02349 hypothetical protein
          Length = 386

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 480 EVSVVLSSTEHLRRQSSSVADKQA 409
           +V VVLS+ EHL    + +ADK+A
Sbjct: 279 QVMVVLSTPEHLPESPNCIADKRA 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,635
Number of Sequences: 28952
Number of extensions: 287274
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)