Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l21
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   1.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.9  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 190 SRCNARPSSFCPHLV 146
           SRC+ R   FCP++V
Sbjct: 44  SRCDGRCQRFCPNVV 58


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 190 SRCNARPSSFCPHLV 146
           SRC+ R   FCP++V
Sbjct: 44  SRCDGRCQRFCPNVV 58


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 575 KKYSRIPRYHCCNCPPVT 628
           K +S + +Y C NC   T
Sbjct: 37  KSHSNVYQYRCANCTYAT 54


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 203 STSHLPSERLSSRVTLAWKTQESNSRSGTRLVRRGSGQWPRCT 331
           S   + S   SS + +  + QE+N R   + +   + +WP  T
Sbjct: 317 SDKQIASVVKSSELAVRIQRQENNIRPMVKQIDTVAAEWPATT 359


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 490 PLSGIPDRFYCRQRTTPSP 434
           PL   P+R Y R+ T P P
Sbjct: 238 PLYQQPERHYERRATPPQP 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,800
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)