Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l18
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing ...    29   1.1  
At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing ...    29   1.4  
At1g29550.1 68414.m03614 eukaryotic translation initiation facto...    27   4.4  
At1g55900.1 68414.m06411 NLI interacting factor (NIF) family pro...    27   7.6  

>At5g60850.1 68418.m07633 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP4 gi:5059396
           from [Arabidopsis thaliana]; EMBL:AF155817
          Length = 307

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 29/87 (33%), Positives = 37/87 (42%)
 Frame = -2

Query: 430 KLSLFNITNISFMVQYPHILQPCRLVDRVGLVARNLSTNFPCISSCRMRKQTKQRQSPEP 251
           K   +N  N+S   Q  H  + CR     G V RN+    P    CR  K++K +Q P  
Sbjct: 62  KFCYYNNYNLS---QPRHFCKNCRRYWTKGGVLRNV----PVGGGCRKAKRSKTKQVPS- 113

Query: 250 CYNSFACLCTTAPMVHTVLEAHSYGRH 170
             +S A   TT    H V E  S G H
Sbjct: 114 --SSSADKPTTTQDDHHVEEKSSTGSH 138


>At2g37590.1 68415.m04612 Dof-type zinc finger domain-containing
           protein 
          Length = 330

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/95 (23%), Positives = 39/95 (41%)
 Frame = -2

Query: 394 MVQYPHILQPCRLVDRVGLVARNLSTNFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTA 215
           + Q  H  + CR     G   RN+     C  + R +  +    +     N+ +     A
Sbjct: 109 LTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNSNNNNNSTATSNNTSFSSGNA 168

Query: 214 PMVHTVLEAHSYGRHIDQALTNIVSYLSIF*PLTY 110
             + T+L +H YG + +  L+ I+S   +  P TY
Sbjct: 169 STISTILSSH-YGGNQESILSQILSPARLMNP-TY 201


>At1g29550.1 68414.m03614 eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative similar to SP|O23252
           Eukaryotic translation initiation factor 4E (eIF-4E)
           (eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01652: Eukaryotic initiation
           factor 4E
          Length = 240

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 211 WEPWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPPSDMVEECEDIE 390
           W  W+ +  S  N+V+        ++FG +    SLY N  PP +    +D+    + IE
Sbjct: 71  WTFWFDNPSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADLYCFKDKIE 130

Query: 391 P 393
           P
Sbjct: 131 P 131


>At1g55900.1 68414.m06411 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 376

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 307 TESLYLNFSPPAQPGPP 357
           T+S++ +F PP QP PP
Sbjct: 44  TQSMFSDFPPPNQPPPP 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,532,112
Number of Sequences: 28952
Number of extensions: 188854
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)