BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte10l15 (501 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41534-5|AAB47597.1| 163|Caenorhabditis elegans Hypothetical pr... 87 9e-18 U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical pr... 30 1.1 Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.4 Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 4.4 Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.4 AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 28 4.4 AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 28 4.4 Z50016-14|CAI06050.2| 177|Caenorhabditis elegans Hypothetical p... 27 5.8 >U41534-5|AAB47597.1| 163|Caenorhabditis elegans Hypothetical protein C16A3.5 protein. Length = 163 Score = 86.6 bits (205), Expect = 9e-18 Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 3/126 (2%) Frame = +3 Query: 48 THAQKVCSLYKRALRNLEAYYDRRHV-YRYQAVLLRERFDKHAKETNMIKANXXXXXXXX 224 +H QKV LYKR LR ++ +Y ++ R+Q ++R RFD +A E + K+ Sbjct: 13 SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72 Query: 225 XXXXXQHPIPKYFATSPGGVAHERVVTPPDWVLD--YWHPLEKAQYPEYFKKREQRKKEF 398 +H P FA PGG +++R PD ++D W E+ Q+P YF REQRKKE Sbjct: 73 QLWEKRHFKPFRFALDPGGSSYDRERESPDEIVDSDQWTLAEREQFPYYFNTREQRKKEL 132 Query: 399 VAMWEK 416 + W K Sbjct: 133 LTHWAK 138 >U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical protein C42D4.11 protein. Length = 297 Score = 29.9 bits (64), Expect = 1.1 Identities = 17/51 (33%), Positives = 23/51 (45%) Frame = +3 Query: 39 GVKTHAQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMI 191 G A K C+ Y AL LE + H+++ A L ER+ K T I Sbjct: 151 GTHVEASKACNEYNAALTGLETENETYHIWK-TAYSLVERYPSQPKITERI 200 >Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical protein C04A11.4 protein. Length = 952 Score = 27.9 bits (59), Expect = 4.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 336 PLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH*TNCINS 473 P+ KA P Y ++ Q F AMW +++ H NC NS Sbjct: 723 PVRKAPPPPYAQRIRQ---SFTAMWGEDHSHVAVAQPAHPRNCYNS 765 >Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein F26A3.3 protein. Length = 1632 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 341 KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 252 +R V D G+D+T M + R CGK+FR Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120 >Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical protein C04A11.4 protein. Length = 952 Score = 27.9 bits (59), Expect = 4.4 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 336 PLEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKDKHH*TNCINS 473 P+ KA P Y ++ Q F AMW +++ H NC NS Sbjct: 723 PVRKAPPPPYAQRIRQ---SFTAMWGEDHSHVAVAQPAHPRNCYNS 765 >AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA polymerase relatedEGO-1 protein. Length = 1632 Score = 27.9 bits (59), Expect = 4.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 341 KRMPIVQDPIRGSDYTLMSYTSRTCGKIFR 252 +R V D G+D+T M + R CGK+FR Sbjct: 1091 ERAERVPDYHMGNDHTPMYVSPRLCGKLFR 1120 >AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal neurexin-like protein 1 protein. Length = 1655 Score = 27.9 bits (59), Expect = 4.4 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -1 Query: 147 TIQLGIGTHVGGRSTLLNYVKPFYKGYRLF 58 TI + I T+ G+S +LN+V F GYR F Sbjct: 1276 TINVAI-TYENGKSDVLNFVGDFLDGYRHF 1304 >Z50016-14|CAI06050.2| 177|Caenorhabditis elegans Hypothetical protein T21C12.8 protein. Length = 177 Score = 27.5 bits (58), Expect = 5.8 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +2 Query: 344 ESPIS*IFQETRAKKERVRCYVGEGVWQAR*ER*ASLDKL 463 ++PIS +F TR C+ GVW+ R +R S+ KL Sbjct: 16 KAPISAVFCPTRGSSTAPNCFAIIGVWRRRKKR--SVSKL 53 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,055,488 Number of Sequences: 27780 Number of extensions: 219192 Number of successful extensions: 637 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 604 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 634 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 956602620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -