Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l15
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34700.1 68417.m04925 complex 1 family protein / LVR family p...    38   0.003
At4g30060.1 68417.m04276 expressed protein contains Pfam profile...    31   0.58 
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put...    30   0.76 
At5g05680.1 68418.m00625 nuclear pore complex protein-related co...    28   4.1  
At3g17300.1 68416.m02211 expressed protein                             28   4.1  
At5g57270.3 68418.m07155 expressed protein contains Pfam profile...    27   5.4  
At5g57270.2 68418.m07154 expressed protein contains Pfam profile...    27   5.4  
At5g57270.1 68418.m07153 expressed protein contains Pfam profile...    27   5.4  
At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH ba...    27   9.4  
At5g41360.1 68418.m05026 DNA repair protein and transcription fa...    27   9.4  

>At4g34700.1 68417.m04925 complex 1 family protein / LVR family
           protein contains Pfam PF05347: Complex 1 protein (LYR
           family)
          Length = 117

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = +3

Query: 57  QKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETNMIKANXXXXXXXXXXXX 236
           ++V  LY+RAL++   +   RH++   A  LRE+F+ +    ++ + +            
Sbjct: 18  ERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVEDVDRIDKLIAHGEAEYNK 77

Query: 237 XQHPIPKYFATSPGGVAHERVVTPP 311
            +HP P     +PGG    R  TPP
Sbjct: 78  WRHPDPYIVPWAPGGSKFCRNPTPP 102


>At4g30060.1 68417.m04276 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 401

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 240 QHPIPKYF-ATSPGGVAHERVVTPPDWVLDYWHPLEKAQYPE 362
           +H +P +F    PGG+A+   VT  DW    WHP  K   PE
Sbjct: 292 EHYLPTFFHMLDPGGIANW-TVTQVDWSERKWHP--KTYMPE 330


>At4g02510.1 68417.m00343 chloroplast outer membrane protein, putative
            similar to chloroplast protein import component Toc159
            [Pisum sativum] GI:8489806, chloroplast outer envelope
            protein 86 [Pisum sativum] GI:599958, GTP-binding protein
            [Pisum sativum] GI:576509
          Length = 1503

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 339  LEKAQYPEYFKKREQRKKEFVAMWEKEYGKPDEKD 443
            L+K Q+ E  K+ ++ KK    + E E+G P E+D
Sbjct: 1181 LQKKQWREELKRMKEMKKNGKKLGESEFGYPGEED 1215


>At5g05680.1 68418.m00625 nuclear pore complex protein-related
           contains weak similarity to Nuclear pore complex protein
           Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
           protein) (Swiss-Prot:Q99567) [Homo sapiens]
          Length = 810

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 120 VGGRSTLLNYVKPFYKGYRLFEHE 49
           V GRS LL+YVK F++ Y  + H+
Sbjct: 614 VEGRSILLDYVKLFHENYIEYAHK 637


>At3g17300.1 68416.m02211 expressed protein
          Length = 91

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 54  AQKVCSLYKRALRNLEAYYDRRHVYRYQAVLLRERFDKHAKETN 185
           A  V  LY+  LR  +    ++H       ++R++F KH  ET+
Sbjct: 13  ANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETD 56


>At5g57270.3 68418.m07155 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 388

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 240 QHPIPKYF-ATSPGGVAHERVVTPPDWVLDYWHP 338
           +H +P +F    PGG+++  V T  DW    WHP
Sbjct: 281 EHYLPTFFHMLDPGGISNWSV-TYVDWSERRWHP 313


>At5g57270.2 68418.m07154 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 388

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 240 QHPIPKYF-ATSPGGVAHERVVTPPDWVLDYWHP 338
           +H +P +F    PGG+++  V T  DW    WHP
Sbjct: 281 EHYLPTFFHMLDPGGISNWSV-TYVDWSERRWHP 313


>At5g57270.1 68418.m07153 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 388

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 240 QHPIPKYF-ATSPGGVAHERVVTPPDWVLDYWHP 338
           +H +P +F    PGG+++  V T  DW    WHP
Sbjct: 281 EHYLPTFFHMLDPGGISNWSV-TYVDWSERRWHP 313


>At5g41370.1 68418.m05027 DNA repair protein, putative / TFIIH basal
           transcription factor complex helicase XPB subunit,
           putative (XPB1) contains Pfam profile PF00271:Helicase
           conserved C-terminal domain; identical to cDNA putative
           DNA repair protein (XPB1) GI:10314019
          Length = 767

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 324 DYWHPLEKAQYPEYFKKREQRKKE 395
           + W P+ K  + EY KK   +KK+
Sbjct: 476 EVWCPMTKEFFAEYLKKENSKKKQ 499


>At5g41360.1 68418.m05026 DNA repair protein and transcription
           factor, putative (XPB2) similar to SP|P49135 TFIIH basal
           transcription factor complex helicase XPB subunit (EC
           3.6.1.-) (Basic transcription factor 2 89 kDa subunit)
           {Mus musculus}; contains Pfam profile PF00271: Helicase
           conserved C-terminal domain; contains TIGRfam profile
           TIGR00603: DNA repair helicase rad25
          Length = 766

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 324 DYWHPLEKAQYPEYFKKREQRKKE 395
           + W P+ K  + EY KK   +KK+
Sbjct: 476 EVWCPMTKEFFAEYLKKENSKKKQ 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,190
Number of Sequences: 28952
Number of extensions: 205286
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)