Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10l13
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 30 1.3
At2g22795.1 68415.m02704 expressed protein 29 3.0
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,... 29 3.0
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 29 4.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 4.0
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 4.0
At3g11720.1 68416.m01437 expressed protein 29 4.0
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 28 5.2
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi... 28 6.9
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 27 9.2
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 27 9.2
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 27 9.2
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 27 9.2
At3g30560.1 68416.m03867 hypothetical protein 27 9.2
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 27 9.2
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 27 9.2
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 27 9.2
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 585 IWRSQVRWKSHHALAKRQMDEASQSH*WKENNNNGH 692
+W RW+SHH +A+ ++A + + +K N + H
Sbjct: 34 LWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIH 69
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 424 TEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKS 537
T+ Q+ ++ + QEVKDV+ + P + NG S++S
Sbjct: 693 TQEQSDSSSDTNLPQEVKDVRTDLETLPDSGNGGSNES 730
>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase SP:P45582 from
[Asparagus officinalis]
Length = 815
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 383 HHTNTLNTYKEKCLLKHRIRMPLWSK 460
H N+L ++ CL K R +P+WSK
Sbjct: 769 HSPNSLAVVQKACLKKSRCSVPVWSK 794
>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 424 TEAQNTDAAVEQVTQEVKDVKL 489
TE N D +E V Q++KD KL
Sbjct: 265 TEESNVDEVIESVKQQIKDAKL 286
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 433 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 540
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 523 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 558
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 433 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 540
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 281 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 316
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +1
Query: 451 VEQVTQE--VKDVKLENGNAPGASNGTSSKSED 543
V ++ +E V D+K EN ++P +S+ +SS SED
Sbjct: 348 VPEIEEEECVDDLKEENKSSPSSSSSSSSSSED 380
>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|P47823
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Oryctolagus
cuniculus}; contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 391 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKL 489
K IK + TE N D E V Q+VKD KL
Sbjct: 254 KEIKAVLTSQVTEEINVDEVTEMVKQQVKDAKL 286
>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 883
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +1
Query: 304 GSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDV 483
G SA ++A +K+L + L + + + I + + +TE+ A + K
Sbjct: 99 GYKSALQQTADVKQLLELEEL---LKDARREIDGILKSHATESPQETPAYHSEKSDEKSD 155
Query: 484 KLENGNAPGASNGTSSKS 537
KL+N + +SNG S +S
Sbjct: 156 KLDNHESGASSNGNSHES 173
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 530 VKARITPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG*SKPKS 661
+K + + +S + +R PN + P +KPS S K NG KPKS
Sbjct: 116 LKRKQSEVVSEEQNR--PN-KSPRSFDKPSPSNKKGNGFKKPKS 156
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +1
Query: 391 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK-LENGNAPGASNGTSSKSEDNALXXXXX 567
K++ H RK+ ++ A +E + E G NG + + E+ A
Sbjct: 782 KFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGA------ 835
Query: 568 XXXXXXXGDPKSDGK-AITLSQSDKWMKQAKVIDGKKITTT 687
DP SD + ++S+KW+ +V+D K TTT
Sbjct: 836 --DDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTT 874
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +1
Query: 391 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK-LENGNAPGASNGTSSKSEDNALXXXXX 567
K++ H RK+ ++ A +E + E G NG + + E+ A
Sbjct: 782 KFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGA------ 835
Query: 568 XXXXXXXGDPKSDGK-AITLSQSDKWMKQAKVIDGKKITTT 687
DP SD + ++S+KW+ +V+D K TTT
Sbjct: 836 --DDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTT 874
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 170 NHDEHFVKITLQSSKRYDSRISRVLSNIGAHF 265
+HD+ F K+T + YD I VL N G F
Sbjct: 610 DHDDWFNKMTSEQKGIYDEIIKAVLENSGGIF 641
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 173 HDEHFVKITLQSSKRYDSRISRVLSNIGAHFAAPVSSS 286
HD+ +T + K YD + VL+N G V+SS
Sbjct: 1017 HDDWLKMLTTEQKKVYDKIMDAVLNNKGGDICLNVASS 1054
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = +1
Query: 286 QGKATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVT 465
Q ATA + +AA + + T+S + + +KH+ + + E TD ++
Sbjct: 83 QTTATAMATTAAPTTTAPTTAPTTESPMLDDSTFYDALKHIPAEETQENMQTDEVEDENE 142
Query: 466 QEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAITLSQSDK 639
+E K E+G++ + G+ S SE+ + + DG A+ + ++
Sbjct: 143 KEEGSEKEESGSS-SQTLGSDSDSEETETNKEVACANPVEEAERQDDGLAVIEEEEER 199
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = +2
Query: 524 RPVKARITPYLSRKPSRRFPNLEIPSPMEKP------SRSRKATNG*SKPKSLMERK*QQ 685
R + +TP S++PSR + +P+ P S R+A+ K L E++ Q
Sbjct: 266 RDMGTEMTPIASQEPSRNGTPIRATTPIRSPISSEPSSPGRQASASPMSNKELSEKELQM 325
Query: 686 RTR 694
+TR
Sbjct: 326 KTR 328
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 549 LIFQGSLQGVFQIWRSQVRWK-SHHALAKRQMDEAS 653
L+F GS G ++W+ ++R K + H+L + + + S
Sbjct: 189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQES 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,546
Number of Sequences: 28952
Number of extensions: 272013
Number of successful extensions: 729
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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