Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l12
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   3.1  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   3.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   5.5  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   5.5  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 647 FRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 543
           FRN +KG    P+ G      R +  KKFL R  D
Sbjct: 231 FRNTHKGVDDTPRPGFVNDMLRSEFHKKFLARFVD 265


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 173 CEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 277
           C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 64  CGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 647 FRNDNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYD 543
           +RND   +    +  ND  R RD+ D  + ++ YD
Sbjct: 205 YRNDRNNW--RERTHNDRYRHRDKYDSGYFKKHYD 237


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 641 NDNKGYPVHPQNGNDEPRRRDQL 573
           N NK      +NGNDE R  D L
Sbjct: 419 NGNKSEQEEKENGNDETRSNDSL 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,105
Number of Sequences: 5004
Number of extensions: 47458
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)