Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10l12
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52) 30 1.9
SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_38711| Best HMM Match : Phage_integrase (HMM E-Value=0.0069) 29 3.3
SB_59348| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13) 28 7.6
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_37133| Best HMM Match : rve (HMM E-Value=0.23) 28 7.6
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2) 28 7.6
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 626 YPVHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 519
Y PQ+ +E RR K+ R YD H PLPP
Sbjct: 327 YDQQPQHSTEEETRRLIGAKERQRHYYDQHARPLPP 362
>SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)
Length = 105
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 225 IDCGQCGKHG*HVGDSSHLVGYEDVTRTGATANGPQ 118
I+C +C H V +S HLVG + T +T+ Q
Sbjct: 70 IECSKCNSHQQSVDESRHLVGPGSKSTTDSTSRSSQ 105
>SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 449 VIPCYRYEDGRIDQPTVLMRRACEVAAGVRGRRKPFVETSYR 574
+IP ++D+ TVL R A + +RGR PF ET+Y+
Sbjct: 209 MIPMCNAMSRKLDKLTVL-RMAVQHMRALRGRAVPFTETNYK 249
>SB_38711| Best HMM Match : Phage_integrase (HMM E-Value=0.0069)
Length = 331
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 626 YPVHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 519
Y PQ+ +E RR K+ R +D H PLPP
Sbjct: 142 YDQQPQHSTEEETRRLIGAKERQRHYFDQHARPLPP 177
>SB_59348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 554 FVETSYRADPYDEVHRYHSEDEQGNLCYHYE 646
FV+ Y D YD+ + Y+ +D+ GN Y+YE
Sbjct: 50 FVDEDYGRD-YDQDYYYYEQDDDGNY-YYYE 78
>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 554 FVETSYRADPYDEVHRYHSEDEQGNLCYHYE 646
FV+ Y D YD+ + Y+ +D+ GN Y+YE
Sbjct: 1013 FVDEDYGRD-YDQDYYYYEQDDDGNY-YYYE 1041
>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
Length = 901
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 620 VHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 519
+ PQ+ +E RR K+ R +D H PLPP
Sbjct: 603 LQPQHSTEEETRRLIGAKERQRHYFDQHARPLPP 636
>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 588
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 228 FTVVTLGRRHH*GGQVVVIARNLIAVIVTEIIAPLAKTE 344
F++ ++ R HH G ++ +A + VIV+ P+ + E
Sbjct: 464 FSLFSMVRHHHFPGLIIYVASGAVMVIVSLFTKPVPREE 502
>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
Length = 359
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 620 VHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 519
+ PQ+ +E RR K+ R +D H PLPP
Sbjct: 281 LQPQHSTEEETRRLIGAKERQRHYFDQHARPLPP 314
>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 291 NLIAVIVTEIIAPLAKTET-PHRPLVVRIQPTSPLQTAVQLVVSLLAN 431
+++A+ + + L +T+ PH L +QP L+T VQL +L N
Sbjct: 790 SIVAICIIMVWTELHQTKAHPHNALGTNVQPRDALRTNVQLRNALGTN 837
>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
Length = 1716
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 638 DNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLP--PRRRASLEPLADQYG 477
+ K YP + +GND + + + L R+YD L ++S+ P D G
Sbjct: 417 NRKSYPGNQGDGNDRTKTKSSTQEDLLSRSYDKRKLTKEQLTETKSSVSPEKDYRG 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,812,872
Number of Sequences: 59808
Number of extensions: 388480
Number of successful extensions: 1062
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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