Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l12
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   2.0  
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    29   2.0  
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    29   2.0  
At1g32190.1 68414.m03959 expressed protein                             28   4.7  
At3g49770.1 68416.m05442 hypothetical protein heat shock protein...    28   6.2  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 125 PFAVAPVLVTSSYPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSK 289
           PF   P   T  +P R  +     P      Q   +  +TRP+TP RRS+  D++
Sbjct: 149 PFGTQPK--TPEHPLRTPQHRPRTPQHRSAHQEDAFSLETRPRTPERRSNTSDTR 201


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 593 PRRRDQLDKKFLRRAYDAHGLPLPPRRRASLEP 495
           PRRR   D  + RR+    G   PPRRR+   P
Sbjct: 118 PRRRRSPDYGYARRSISPRGRRSPPRRRSVTPP 150


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 593 PRRRDQLDKKFLRRAYDAHGLPLPPRRRASLEP 495
           PRRR   D  + RR+    G   PPRRR+   P
Sbjct: 118 PRRRRSPDYGYARRSISPRGRRSPPRRRSVTPP 150


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +2

Query: 191 CYPCL--PHCPQSMVYCCDTRPKTPLRRSSCCDS 286
           C  C   P CP+   + C   P T   RSSCC S
Sbjct: 359 CSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCS 392


>At3g49770.1 68416.m05442 hypothetical protein heat shock protein
           108 precursor, Gallus gallus, PIR:HHCH08
          Length = 223

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 593 PRRRDQLDKKFLRRAYDAHGLPLPPRRRASLEPLADQ 483
           P R  +L+K  LRRA + HG+ L P    + EP  D+
Sbjct: 189 PDREKELEK--LRRAINHHGIQLGPASYETTEPDEDE 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,806,100
Number of Sequences: 28952
Number of extensions: 249357
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)