Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l11
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240...    29   3.0  
06_01_0788 - 5895600-5896378,5896519-5896846                           28   6.8  
05_04_0031 + 17353292-17354353                                         28   6.8  
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    27   9.0  

>01_06_0946 +
           33220910-33222221,33223373-33223734,33223863-33224073,
           33224174-33224411,33224492-33224642,33224733-33224997,
           33231775-33231820,33232167-33232815,33232883-33233384,
           33235023-33235360,33235466-33235676,33235769-33235992,
           33236042-33236115,33236147-33236234,33236316-33236612
          Length = 1655

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 509 YCDRSDSYACSCIPGEYHTRKIRSW 435
           YCD S    CSC+PG +  R  + W
Sbjct: 304 YCDTSTPTLCSCLPG-FQPRSPQQW 327


>06_01_0788 - 5895600-5896378,5896519-5896846
          Length = 368

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 281 GNVEIDNGETLTLSCGESRVRHPNANKHFEV-ATVTCQGGDTFTNNDWITAPSSFLFFSC 457
           GN  I+NG T  +S G   + +P+  K FE+ A +     +TF   D I   + + F   
Sbjct: 300 GNKVIENGYTDLVSFGRLFLANPDLPKRFELDAPLNKYDRNTFYTQDPIVGYTDYPFLDE 359

Query: 458 D 460
           D
Sbjct: 360 D 360


>05_04_0031 + 17353292-17354353
          Length = 353

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 233 PVIIRNGRLLEPTDKYGNVEIDNGETLTL 319
           P ++R G LLEP+D +G +E+D G  L++
Sbjct: 107 PGLLRAGVLLEPSDDFG-LELDIGPDLSV 134


>01_01_0548 -
           4033077-4033349,4034007-4034261,4034362-4034533,
           4034616-4034839,4035168-4035332,4035591-4035881,
           4035971-4036303,4036391-4036485,4036570-4036689,
           4036778-4036934,4037176-4037279,4037383-4037543,
           4037636-4037952,4038655-4038936,4039020-4039321,
           4039453-4039543,4040227-4040280,4040367-4040684,
           4041008-4041092,4041178-4041266,4041474-4041594,
           4042136-4042431
          Length = 1434

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 351 FGCLTLDSPQLKVRVSPLSISTFPYLSVGSRSLP 250
           F  + ++ P+++VR   L++    Y+ VGSR+LP
Sbjct: 97  FDAVQIEFPKIEVRYEDLTVDA--YVHVGSRALP 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,740
Number of Sequences: 37544
Number of extensions: 313918
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)