Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l11
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10582| Best HMM Match : DUF1168 (HMM E-Value=1.8)                   33   0.25 
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_10582| Best HMM Match : DUF1168 (HMM E-Value=1.8)
          Length = 454

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 22/97 (22%), Positives = 43/97 (44%)
 Frame = +2

Query: 239 IIRNGRLLEPTDKYGNVEIDNGETLTLSCGESRVRHPNANKHFEVATVTCQGGDTFTNND 418
           +I+N  L  P+    +V +   ++L +SC     +  NA  + +    +  GG+   N+ 
Sbjct: 47  VIKNKDLDRPSTHISDVIVPTSDSLEISCDTQSTQSDNAESNQDCGATS--GGE--KNSS 102

Query: 419 WITAPSSFLFFSCDIPPVYMSKRTNRTCHNNNKIFEV 529
           +   P+       D+PPV +   +N +  N  +  EV
Sbjct: 103 YQAEPAPLTPPPADVPPVCLPVVSNTSLPNEPQSTEV 139


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 413 NDWITAPSSFLFFSC-DIPPVYMSKRTNRTCH 505
           NDWI AP  +  F C  + P  ++K  N T H
Sbjct: 792 NDWIVAPPGYHAFYCTGVCPYPIAKHLNATNH 823


>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 499  GPIRTLAHVYRGNITREK*EAGGRCDPIVVRKRITA 392
            GP+  + H+Y G IT         C  +V+R+ +TA
Sbjct: 898  GPLPHIVHLYWGRITEVPYRTSFTCIGVVLRRSLTA 933


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 503  DRSDSYACSCIPG 465
            DR   YACSCIPG
Sbjct: 2729 DRLGGYACSCIPG 2741


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,027,825
Number of Sequences: 59808
Number of extensions: 381121
Number of successful extensions: 1131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)