Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l10
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    28   5.6  
At1g34510.1 68414.m04289 peroxidase, putative similar to peroxid...    28   5.6  
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    27   7.4  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    27   7.4  

>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 458 YLNYTLKGYKDLVNNFHFSFYIRFVFNVFCNLGSNYLIKMYHLK 589
           YL+  ++G   L  N    ++++ VFN+  NL  N L+K + +K
Sbjct: 219 YLDLVIEGKLPL--NHEILYHLQDVFNLLPNLNVNELVKAFSVK 260


>At1g34510.1 68414.m04289 peroxidase, putative similar to peroxidase
           ATP13a GB:CAA67312 from [Arabidopsis thaliana]
          Length = 310

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 406 DPGINSSQSDYYYNNKLLFELHLERIQRSGQ 498
           D    S  SD+ YNNKL  E   E +Q+ G+
Sbjct: 260 DGSTRSIVSDFAYNNKLFKESFAEAMQKMGE 290


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 458 YLNYTLKGYKDLVNNFHFSFYIRFVFNVFCNLGSNYLIKMYHLK 589
           YL+  ++G   L  N    ++++ VFN+  NL  N L+K + +K
Sbjct: 219 YLDLVIEGKLPL--NHEILYHLQDVFNLLPNLNVNELVKAFAVK 260


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 163 NNGQYLFQTMTENRKRSREDDTCEFM----PLSKRINNLHINNGLVNTSAS 303
           N  +Y  +    N+KR  +  TC +      L +  N  H NN +  +S+S
Sbjct: 463 NINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERNKFHSNNNIAASSSS 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,551
Number of Sequences: 28952
Number of extensions: 209298
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)