Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l09
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0504 + 21535192-21535194,21535306-21535406,21536964-215370...    31   0.42 
06_01_1038 + 8153612-8153983,8154084-8154419,8154681-8154729,815...    29   1.3  
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    29   2.2  
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239...    27   5.1  

>06_03_0504 +
           21535192-21535194,21535306-21535406,21536964-21537042,
           21537128-21537175
          Length = 76

 Score = 31.1 bits (67), Expect = 0.42
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 111 TSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXX 290
           +SP+    +P              A FF+YE TS++ +R + KE+  + +A+        
Sbjct: 7   SSPVPVDWYPTLAVVMVAVGLMFTASFFIYEATSSRRNRSLAKEIATATIASVFLGFGSL 66

Query: 291 XXXXWVGIYV 320
                 G+YV
Sbjct: 67  FVLLASGVYV 76


>06_01_1038 +
           8153612-8153983,8154084-8154419,8154681-8154729,
           8155277-8155427,8156104-8156239,8157400-8157726
          Length = 456

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 121 IGDVYRIIDSISRLIFMAILERNTIKNKTNKTRQTQRL 8
           IGD+Y  +DS+  L+F+  L R+T K    K +  +RL
Sbjct: 251 IGDLYYALDSLPCLLFIMCL-RDTFKQDKRKFKDPRRL 287


>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
            19426069-19426302,19426523-19426656,19427663-19427746,
            19428355-19428645,19428788-19429120,19429317-19429390,
            19429464-19429644,19429993-19430096,19430232-19430392,
            19430727-19431040,19431583-19431864,19432431-19432732,
            19433176-19433266,19433368-19433421,19438917-19438993,
            19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 188  PGREEYSYSEQQKG*MWKNCRVYWR 114
            P R    + EQ K  +WK C  YWR
Sbjct: 1117 PTRFPQKFREQLKACIWKQCLSYWR 1141


>03_01_0306 +
           2391831-2391858,2392831-2392902,2393511-2393698,
           2394143-2394203,2394306-2394368,2394396-2394474,
           2394557-2394689,2394727-2394934,2398088-2398143,
           2398252-2400030,2400128-2400281,2400467-2401125
          Length = 1159

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 172 YSSRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFLVSEFYSCC 300
           Y+   GSSF+  ++  P    S  Y Y +  PYF  +  ++ C
Sbjct: 626 YAEEEGSSFSDSEIGSPTSRHSWEYIYRFSNPYFGSTLSHASC 668


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,112,381
Number of Sequences: 37544
Number of extensions: 183294
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)