Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l09
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29735.1 68417.m04234 expressed protein contains Pfam domain ...    37   0.007
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    29   1.9  
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    28   3.3  
At3g50300.1 68416.m05501 transferase family protein similar to a...    27   4.3  
At2g30630.2 68415.m03733 expressed protein similar to H1-1flk [A...    27   4.3  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   5.7  
At3g12970.1 68416.m01616 expressed protein                             27   5.7  

>At4g29735.1 68417.m04234 expressed protein contains Pfam domain
           PF05251: Uncharacterised protein family (UPF0197)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +3

Query: 114 SPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVAAXXXXXXXXX 293
           SPI  A++P              A FF+YE TS++ +R + KEL  S VA+         
Sbjct: 8   SPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAVASVFLGFGSLF 67

Query: 294 XXXWVGIYV 320
                G+YV
Sbjct: 68  LLLASGVYV 76


>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 172 YSSRPGSSFTKLQVLKPQEICSKSYF-YHWWPPYFLVSEFYS 294
           +S  PG+    +++++  E C  SYF YHW     ++S+  S
Sbjct: 116 FSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQILS 157


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -2

Query: 310 PTHSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKK 149
           P +SN NK  KPEN+ AT +K++ +   +     + S T+     +   PS+++
Sbjct: 441 PENSNNNK--KPENECATTNKNDVMGEMIRTHRRLLSETREIDEASCNFPSSRR 492


>At3g50300.1 68416.m05501 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 448

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 304 HSNKNKIPKPENKAATNDKSNSLNISLEALVLVTS*TKNQAVKNIPIPSNKKVRCGKTAG 125
           H  K K+   + KA  ND+  S +I + +L  V +      V++  +   ++ RCG  A 
Sbjct: 234 HFTKEKLS--DLKAKANDEIGSSDIKISSLQAVLAHLWRSIVRHSGLNQEEESRCGVAAD 291

Query: 124 F 122
           F
Sbjct: 292 F 292


>At2g30630.2 68415.m03733 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 552

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 172 YSSRPGSSFTKLQVLKPQEICSKSYF-YHWWPPYFLVSE 285
           +S  PG+    +++++  E C  SYF YHW     ++S+
Sbjct: 116 FSEEPGADSLFIKLVEEFERCILSYFAYHWSHADLMISQ 154


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 170  SYSEQQKG*MWKNCRVYWRRVP 105
            SY  Q +  +WK  + YWR VP
Sbjct: 1131 SYLSQFQACLWKQHKSYWRNVP 1152


>At3g12970.1 68416.m01616 expressed protein
          Length = 381

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -2

Query: 181 VKNIPIPSNKKVRCGKTAG-FIGDVYRIIDSISRLIFM---AILERNTIKNKTNKTR 23
           V N+P+ S   +R G  +G F G ++    S S        A L+ N IKN+TN++R
Sbjct: 321 VLNVPVSS---LRSGPKSGLFFGQLFASSSSASSSSSSGNRAQLQSNNIKNRTNRSR 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,724,809
Number of Sequences: 28952
Number of extensions: 167092
Number of successful extensions: 384
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)