Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l08
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 552  TLHIRTQVKHSNKKICN*YLRR*VPLLAKFCT 457
            T+H RTQVK ++ KIC  +  R V   A  CT
Sbjct: 1688 TIH-RTQVKETDDKIC--FTMRPVVSCASGCT 1716


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 197 DFLCSSDILNLFH-NILFLTKGPKYIYFAMVIKLYV 301
           DF  + D+ NL     L    GPKY+   MVI L +
Sbjct: 10  DFWKNWDLKNLTEAEYLAKVLGPKYLSMRMVIPLTI 45


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 502 ITDFFIRMFYLSSNVKCKIK 561
           IT + IRMF +S     K+K
Sbjct: 73  ITRYIIRMFLISQQKTSKLK 92


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 502 ITDFFIRMFYLSSNVKCKIK 561
           IT + IRMF +S     K+K
Sbjct: 56  ITRYIIRMFLISQQKTSKLK 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,973
Number of Sequences: 438
Number of extensions: 4015
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)