Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l08
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27960.1 68418.m03367 MADS-box protein (AGL90)                      31   0.94 
At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains inter...    31   0.94 
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    29   3.8  
At5g09720.1 68418.m01126 magnesium transporter CorA-like family ...    28   6.6  

>At5g27960.1 68418.m03367 MADS-box protein (AGL90)
          Length = 320

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 248 EKEYYGINLKCHLNIRSHQYKN 183
           ++E+Y INL  +LN+ S+QY N
Sbjct: 237 QREFYNINLNLNLNLNSNQYLN 258


>At5g26650.1 68418.m03175 MADS-box protein (AGL36) contains interpro
           domain: IPR002100 transcriptor factor, MADS box;
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain)
          Length = 327

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 248 EKEYYGINLKCHLNIRSHQYKN 183
           ++E+Y INL  +LN+ S+QY N
Sbjct: 239 QREFYNINLNLNLNLNSNQYLN 260


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 430  RLRIRNKNKTLQWPRLQTRKHLHFLEKRLIMLTTSVYYKP*NLDIKFNYHCKI 272
            R  +RN    +Q+P     +H+ FL+  L+M    +  KP  +D+     CKI
Sbjct: 1453 RYYLRNLCDEIQFPNWPIVEHVEFLQSLLVMWREELTRKP--MDLSEGEACKI 1503


>At5g09720.1 68418.m01126 magnesium transporter CorA-like family
           protein (MRS2-8) contains Pfam profile PF01544:
           CorA-like Mg2+ transporter protein
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 359 LRKKINNVNDFSLL*TLKLRHKV*LPLQNICI*VLSSEKEYYGINLKCHLNIRSHQYKNI 180
           LR+ ++   DF     L ++ ++ L   +IC+ V S      G+N+    NI+ H +K +
Sbjct: 316 LREYVDETEDF-----LNIQFEIILTAGSICVSVYSVVVGILGMNIPFPWNIKKHMFKWV 370

Query: 179 YS 174
            S
Sbjct: 371 VS 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,231
Number of Sequences: 28952
Number of extensions: 229137
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)