Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l05
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    28   4.9  
At1g22060.1 68414.m02759 expressed protein                             28   4.9  
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea...    28   4.9  
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea...    28   4.9  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    28   6.5  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    28   6.5  
At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    28   6.5  
At4g28180.1 68417.m04040 expressed protein                             27   8.6  
At2g05120.1 68415.m00539 expressed protein                             27   8.6  

>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 583 GTGLGKGRMVRKVRTDHRDHRDHKGPG-IGKAHKARMDHTGKGIDTDRKARMDHKARMAR 407
           G G GK R  R  R D R   D +    + + H+ R +   +  +  R+ R   ++R   
Sbjct: 410 GNGEGK-RQHRDERDDGRRQHDREDARELERKHRERKERESREDEDRRRRRRREESRDKE 468

Query: 406 TEDTVQGTDRTAHRDHMDIR 347
           +       D  +HRD+ + R
Sbjct: 469 SRRERDEDDHRSHRDYKERR 488


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 84   NRRVNKINVNNGFSSEEGCFDEKCVVLKMHQGASFDFRGH 203
            N + N  ++ +   +  GC++EK V L   +G   DF  H
Sbjct: 905  NLQQNLSSLTDKLINTLGCYNEKLVSLPQWEGVDLDFESH 944


>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 860

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 511 GPGIGKAHKARMDHTGKGIDTDRKARMDHKARMAR 407
           G G+G   K R ++ GKG+++D +   D +  M R
Sbjct: 215 GGGVGTELKKRKEYDGKGLESDEEGDDDDEEYMHR 249


>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 900

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 511 GPGIGKAHKARMDHTGKGIDTDRKARMDHKARMAR 407
           G G+G   K R ++ GKG+++D +   D +  M R
Sbjct: 255 GGGVGTELKKRKEYDGKGLESDEEGDDDDEEYMHR 289


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 546 TLRTMRPLPKPVPMPMSKPAKEM*ISHLSSMQLSRSYET 662
           TL T      P+P P S+PA     S LSS  +SR   T
Sbjct: 304 TLATAVARLHPLPAPGSRPASPSRTSFLSSSSISRGMST 342


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 546 TLRTMRPLPKPVPMPMSKPAKEM*ISHLSSMQLSRSYET 662
           TL T      P+P P S+PA     S LSS  +SR   T
Sbjct: 304 TLATAVARLHPLPAPGSRPASPSRTSFLSSSSISRGMST 342


>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 510 PLWS-LWSLWSVRTLRTMRPLPKPVPMPMSKP 602
           P WS +  L     +  + P+P P+PMPM  P
Sbjct: 335 PSWSSVIGLLDQEHVHVLMPMPMPMPMPMPMP 366


>At4g28180.1 68417.m04040 expressed protein 
          Length = 256

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +3

Query: 447 SVSIPLPVWSMRALWALPIPGPLWSLWSLWSVRTLRTMRPLPKPVPMPMSKPAKEM*ISH 626
           SVS+P+P+       ++P+P P      L  V +  T+      VP+P+S PA E  ISH
Sbjct: 38  SVSVPIPI-------SVPVPVP-----DL--VPSAPTVSDSEAQVPLPLSPPAPE--ISH 81

Query: 627 ----LSSMQLSRSYET 662
               + S+ +S SY T
Sbjct: 82  SKSDICSVSVSHSYST 97


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 445 RKARMDHKARMARTEDTVQGTDRTAHRDHMDIRN 344
           RK   + ++    T  T  G DRTA R++ DI+N
Sbjct: 530 RKNSSNERSTRDETRVTPYGVDRTAGRENSDIQN 563


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,903,880
Number of Sequences: 28952
Number of extensions: 200408
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)