Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l04
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   263   2e-71
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   146   3e-36
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   146   4e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   141   8e-35
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    29   0.70 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.2  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   1.6  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.7  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   8.7  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  263 bits (645), Expect = 2e-71
 Identities = 117/207 (56%), Positives = 147/207 (71%)
 Frame = +3

Query: 111 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYV 290
           MREIVH+Q G+CGNQ+G+ FW  I+DEHG+D  G Y G S+ Q ER+NVY+NEA G KYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 291 PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVV 470
           PRAVLVDLEP TMD+++ G +G+++RPDN++ G SGAGN WAKGHYTEGA+L + VLDVV
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 471 RKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXXXX 650
           R+EAE CD LQGFQL H               + + EEYPDR+ A               
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180

Query: 651 XXYNATLSVNQLIENSIQSYCIDNEAL 731
             YNATLS++QL+ENS +++CIDNEAL
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEAL 207


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  146 bits (354), Expect = 3e-36
 Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 3/212 (1%)
 Frame = +3

Query: 114 REIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGAKYVP 293
           REI+ +Q G+CGNQIGS+FW+ +  EHGI P G  +  +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 294 RAVLVDLEPSTMDSIRGGPYGSIYRPDNVVC--GASGAGNNWAKGHYTEGADLLETVLDV 467
           RA+L+DLEP  +++I    YGS+Y P+N++      GAGNNWA G Y+    + E ++D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 468 VRKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDR-ITAXXXXXXXXXXXXX 644
           + +EA+G D L+GF L+H                 L + YP + I               
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181

Query: 645 XXXXYNATLSVNQLIENSIQSYCIDNEALYYI 740
               YN+ L++ +L  N+     +DN AL +I
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  146 bits (353), Expect = 4e-36
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 8/219 (3%)
 Frame = +3

Query: 111 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLERINVYYNEAFGA--- 281
           MRE++ V VG+ G QIG+  WE+   EHGI P G    +S++   + N Y N+ FG    
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVH--KNNSYLNDGFGTFFS 58

Query: 282 -----KYVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADL 446
                K+VPR++ VDLEP+ +D +R GPY  ++ P+ +V G   A NN+A+GHYT G ++
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118

Query: 447 LETVLDVVRKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXX 626
           +++VL+ +R+ A+ C  LQGF + H                 L  EY  +          
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178

Query: 627 XXXXXXXXXXYNATLSVNQLIENSIQSYCIDNEALYYIC 743
                     YN+ L+ +  ++NS  ++ +DNEA Y IC
Sbjct: 179 PQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDIC 217


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  141 bits (342), Expect = 8e-35
 Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 2/213 (0%)
 Frame = +3

Query: 111 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYQGDSDLQLER--INVYYNEAFGAK 284
           MREI+ + VG+ G QIG+  WE+   EHGI P G    ++  Q      + +++E    K
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 285 YVPRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLD 464
           YVPR++ VDLEP+ +D +R GPY  ++ P+ ++ G   A NN+A+GHYT G +L++ V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 465 VVRKEAEGCDCLQGFQLVHXXXXXXXXXXXXXXXANLTEEYPDRITAXXXXXXXXXXXXX 644
            +R+ A+ C  LQGF + H                 L  EY  +                
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180

Query: 645 XXXXYNATLSVNQLIENSIQSYCIDNEALYYIC 743
               YN+ L+ +  ++ +  ++ +DNE+ Y IC
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDIC 213


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 171 KTSSQSGSHISRPVRELFLSFSCINNKEFIEN 76
           +   QS SHISR   ELF   + I N  F EN
Sbjct: 74  REQEQSNSHISRNENELFSKENSIYNGNFSEN 105


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
 Frame = +3

Query: 177 VISDEHGIDPCGRYQGDSDLQLERINVYYNE--AFGAKYVPRAVL----VDLEPSTMDSI 338
           ++  +HG+D  G + GDS  ++  +   Y++   FG    P  VL    VDL P T+  +
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSKKPTFGYLKQPGKVLSANQVDLVP-TLSLL 339

Query: 339 RGG--PYGSI 362
            G   PYG++
Sbjct: 340 LGNPIPYGNL 349


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = -1

Query: 317 LEIYKNSSRNIFSSKCFVVVDIDPLELQIRVSLVAATGVDSVLVRYHFPKLRANLVPTSP 138
           L +Y+ S          ++ ++ P E+Q  VS+V ++  +S+L +Y   +++A LV T+P
Sbjct: 246 LRVYERSDIKTTIDALHLIKNLVP-EIQNTVSVVDSSIKESILKQYWDFRVQAQLVATAP 304


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 GRYQGDSDLQLERINVYYNEAFGAK 284
           GR     +  L  +N+YY  +FGAK
Sbjct: 667 GRTDHRHNFSLHHLNLYYESSFGAK 691


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 291  PRAVLVDLEPSTMDSIRGGPYGSIYRPDNVVCGAS 395
            P A  V+ EP  + +  G P+  I+ P NV   +S
Sbjct: 1588 PSAGSVEREPLFLIAASGSPHAFIWNPHNVSASSS 1622


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 300 VLVDLEPSTMDSIRGGPYGSIYRPDNVVCGASGAGNNWAKGHYTEGA-DLLETVLDVVRK 476
           VL+  +   +   R G + ++  P+  VC  SG G+   K +YT    D +   +D V +
Sbjct: 316 VLLKNKKKLLPLSRKGTF-AVIGPNAKVCNYSGGGSANLKPYYTVSMYDGIAAKIDGVPE 374

Query: 477 EAEGC 491
            A GC
Sbjct: 375 YALGC 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,332
Number of Sequences: 5004
Number of extensions: 52344
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)