Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10l02
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0316 + 15690452-15690555,15690871-15690965,15693707-156937... 31 0.80
09_02_0323 + 7265240-7265287,7265361-7265415,7266816-7266885,726... 29 2.4
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39... 29 3.2
10_08_0952 - 21770449-21770718,21771032-21771277,21771677-217719... 29 4.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 5.6
03_03_0138 + 14766592-14766754,14768052-14768476 28 7.5
02_01_0551 - 4058205-4058879,4059278-4059344,4059523-4059592,405... 28 7.5
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 27 9.9
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 27 9.9
>08_02_0316 +
15690452-15690555,15690871-15690965,15693707-15693783,
15693854-15693908,15695158-15695227,15695388-15695457,
15696047-15696340
Length = 254
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 437 LFNLKRHLQSFRCGSRSGRYIYEHTDVTKTTH*IEGATNL 318
LF+LK HLQ +R G +SG+ + E + + TNL
Sbjct: 84 LFHLKSHLQKYRLGKQSGKEMAEQSKDASYILGAQSGTNL 123
>09_02_0323 +
7265240-7265287,7265361-7265415,7266816-7266885,
7267013-7267082,7267480-7267788
Length = 183
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 437 LFNLKRHLQSFRCGSRSGRYIYEHT 363
LF+LK HLQ +R G +SG+ E +
Sbjct: 8 LFHLKSHLQKYRLGKQSGKEASEQS 32
>03_01_0047 +
391689-392738,392832-392999,393091-393195,393529-393611,
393899-394364
Length = 623
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 434 RAISRHRWNKHNSQRERGKFGF 499
RA+ + R N H++ +RGKFGF
Sbjct: 571 RALRKRRRNAHDAAGQRGKFGF 592
>10_08_0952 -
21770449-21770718,21771032-21771277,21771677-21771953,
21772241-21772518,21773451-21773960
Length = 526
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 327 RALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSEN 482
R+ D++ C ++ F DV GS P G+ + + ++ IGG T ++
Sbjct: 431 RSFDAIRC--ELRAFFDVHEQEGSYPGGIHLEMTGQNVTECIGGSKTVTLDD 480
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 423 FQVKELSRVIGGINTTVSENEGNLV-LGVKMP 515
FQ+ E S G NT +S NEG + +GV MP
Sbjct: 459 FQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMP 490
>03_03_0138 + 14766592-14766754,14768052-14768476
Length = 195
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 434 RAISRHRWNKHNSQRERGKFGFRCKNAKHRRPRGEASSGIQHG 562
R RW + N + ERG G R A + +G +Q G
Sbjct: 60 RLCKGRRWCRSNGRHERGSVGGRSAVASLGKGKGSVGGSVQAG 102
>02_01_0551 -
4058205-4058879,4059278-4059344,4059523-4059592,
4059720-4059777,4059929-4060005,4060108-4060228
Length = 355
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 437 LFNLKRHLQSFRCGSRSGRYIYEHT 363
L++LK HLQ FR G + + EH+
Sbjct: 58 LYHLKSHLQKFRLGKQPHKEFSEHS 82
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 357 DIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGNLVLGVKMPN 518
+ GVFI+ SSG G +PE + + +S IG + +T+ E +L K N
Sbjct: 349 EAGVFIEASSGFGQSPESIHCHHGI--MSAEIGQL-STIPPKERSLEKAQKYAN 399
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 327 RALDSMGCFRDIGVFIDVSSGPGSTPEGLEVTFQVKELSRVIGGINTTVSENEGN 491
R DS+ ++ F DV GS P G+ + + ++ IGG T ++ G+
Sbjct: 456 RPFDSI--LAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGD 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,729,256
Number of Sequences: 37544
Number of extensions: 400307
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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