Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l01
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        33   0.22 
SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)                   31   0.68 
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               30   2.1  
SB_48161| Best HMM Match : LSPR (HMM E-Value=8.2)                      30   2.1  
SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)          28   6.3  
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 225  SYSDTTK-SDSNSKQVMVQGENEEPVRVRRARPSDVPR 335
            SYSD  +  DSNS  + V G N + +RV  +   ++PR
Sbjct: 1276 SYSDEIRVMDSNSDAIRVMGSNSDAIRVMDSNSDEIPR 1313


>SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)
          Length = 540

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 685 LGTMRYTCNMF*TLYFSYKAGALKQCAVRYIILLDLVQLTQRAHFSSIVAS 533
           +  + YTCN+   LY   K    K C +R + L  L++ + R     ++ S
Sbjct: 173 IAALLYTCNVICYLYVVCKTAIKKPCRIRNVSLTPLIRRSSRKGLIRVIRS 223


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 456 TLNGLEPTP*PRNRTKPDLILEELIPL 376
           T+  L PTP PR  T P L+L  L+PL
Sbjct: 632 TVPPLPPTPPPRQSTPPPLLLIPLLPL 658


>SB_48161| Best HMM Match : LSPR (HMM E-Value=8.2)
          Length = 163

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 457 NIEWP*ANALA-KKSHKTRFDPGGADTSGQVCRTCSRTNRITRGTSDGRARRTLTGSSFS 281
           N+  P  N+ A KKS K  F+    D S +   +  RT  +T    +  AR+T+  + F 
Sbjct: 101 NVTLPKINSSAHKKSFKPDFNQRPRDPSHKSTVSKERTFHVTLPKINSSARKTILRAGFE 160

Query: 280 PCT 272
           P T
Sbjct: 161 PAT 163


>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 415 HKTRFDPGGADTSGQVCRTCSRTNRITR 332
           HK R  PG  D  G++C  C   +R+T+
Sbjct: 273 HKARILPGIRDMYGRLCHPCELESRVTK 300


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 391  GADTSGQVCRTCSRTNRITRGTSDGRARRTLTGSSF 284
            GA+ S +  R+ +R  R  RG S GRA R+  G  F
Sbjct: 1288 GAERSTERPRSANRIGRGVRGASGGRALRSPAGRGF 1323


>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 455 VSRKARNQEGLVTNPRSRFGYISLSVGRDDAGEVGSLRELHQIEED 592
           +S +A ++E  ++   S + Y S S  +DD G  GS ++L  +EED
Sbjct: 1   MSSEAVSEEDYISGSESDYSYESGS--KDDLGSAGSDKQLSFLEED 44


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 438  AQGHSMLAEKQEIRRGWSQIRGLA 509
            A  H ++ EKQE+++ W +++ LA
Sbjct: 2474 AHKHELIMEKQEVQKAWKKLQQLA 2497


>SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)
          Length = 317

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 358 CSRTNRITRGTSDGRARRTLTGSSFSPCTITC 263
           C   + I   T  G A +++TG   + C ITC
Sbjct: 45  CRAVSSINEYTLRGHAYKSITGKQLTTCVITC 76


>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 126 TMSSLPGFFKV-----ISGRNLVRRVQGAFSGFGGHVRSYSDTTKSDSNSKQVMVQGENE 290
           T+ S  GF++V      +  N++ + +  F+ +G   R YSD     +N++    +G + 
Sbjct: 319 TVDSYSGFWEVDELTQATAANVIHKTKQHFARYGIPDRVYSDNGPQFANAENTPTKGMDS 378

Query: 291 EPVR 302
            PV+
Sbjct: 379 SPVQ 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,128,552
Number of Sequences: 59808
Number of extensions: 424953
Number of successful extensions: 1396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)